myRT

myRT report for GCA_900484825.1_19536_5_91

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Seq: UDQJ01000190.1 Shigella sonnei strain 4028STDY6329960 genome assembly, contig: ERS1078817SCcontig000190, whole genome shotgun sequence (5977 bp)
Overview 1 RT 1: 2-4583 bp Neighborhood of RT #1 [2, 4585] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 2-151 bp Feature: domain Description: PRK09409 Location: 5-149 bp Feature: domain Description: PRK09409 Location: 5-1 49 bp Feature: gene Location: 272-493 bp Feature: domain Description: Tra5 Location: 284-476 bp Feature: domain Description: Tra5 Location: 284-476 bp Feature: gene Location: 506-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806-1463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 806-1 463 bp Feature: gene Location: 1932-2459 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1938-2082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 938-2082 bp Feature: domain Description: GIIM Note: maturase Location: 2166-2382 bp Feature: domain Description: GIIM Note: maturase Location: 21 66-2382 bp Feature: gene Location: 2812-3054 bp Feature: gene Location: 2966-4585 bp Feature: domain Description: ushA Location: 2981-4583 bp Feature: domain Description: ushA Location: 2981 -4583 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09409 (IS2 transposase TnpB; Reviewed), Tra5 (COG2801), ushA (PRK09558)

Seq: UDQJ01000152.1 Shigella sonnei strain 4028STDY6329960 genome assembly, contig: ERS1078817SCcontig000152, whole genome shotgun sequence (8848 bp)
Overview 1 RT 1: 4441-7738 bp Neighborhood of RT #1 [4441, 7806] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 4441-5472 bp Feature: domain Description: HTH_23 Location: 4519-4660 bp Feature: domain Description: HTH_2 3 Location: 4519-4660 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: gene Location: 5616-6284 bp Feature: domain Description: HTH_23 Location: 5724-5811 bp Feature: domain Description: HTH_2 3 Location: 572 4-5811 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: gene Location: 6378-6638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: gene Location: 6648-7076 bp Feature: gene Location: 7090-7806 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: UDQJ01000191.1 Shigella sonnei strain 4028STDY6329960 genome assembly, contig: ERS1078817SCcontig000191, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 564-2534 bp Neighborhood of RT #1 [564, 2569] RVT-GII RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 564-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 765-1227 bp Feature: gene Location: 1268-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1274-1418 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: domain Description: GIIM Note: maturase Location: 1496-1718 bp Feature: gene Location: 1911-2057 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1923-2034 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1923 -203 4 bp Feature: gene Location: 2084-2569 bp Feature: domain Description: COG3547 Location: 2102-2534 bp Feature: domain Description: COG3 547 Location: 2102-253 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase )