myRT

myRT report for GCA_900484875.1_19536_5_73

Download annotations/find similar RTs

Seq: UDQR01000172.1 Shigella sonnei strain 4028STDY6329942 genome assembly, contig: ERS1078798SCcontig000172, whole genome shotgun sequence (7584 bp)
Overview 1 RT 1: 2-2575 bp Neighborhood of RT #1 [2, 2640] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 2-127 bp Feature: domain Description: PHA02517 Location: 5-125 bp Feature: domain Description: PHA0251 7 Location: 5-1 25 bp Feature: gene Location: 244-1767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 517-1249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 7-1 249 bp Feature: domain Description: GIIM Note: maturase Location: 1324-1522 bp Feature: domain Description: GIIM Note: maturase Location: 1 324-1 522 bp Feature: gene Location: 1721-2146 bp Feature: gene Location: 2359-2640 bp Feature: domain Description: PHA02517 Location: 2365-2575 bp Feature: domain Description: PHA0251 7 Location: 2365-2575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDQR01000195.1 Shigella sonnei strain 4028STDY6329942 genome assembly, contig: ERS1078798SCcontig000195, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 3386-5365 bp Neighborhood of RT #1 [3386, 5391] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3386-3871 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 3967-4134 bp Feature: gene Location: 4160-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: gene Location: 4702-5391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDQR01000207.1 Shigella sonnei strain 4028STDY6329942 genome assembly, contig: ERS1078798SCcontig000207, whole genome shotgun sequence (5253 bp)
Overview 1 RT 1: 1-4597 bp Neighborhood of RT #1 [1, 4599] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 1-165 bp Feature: domain Description: PRK09409 Location: 4-163 bp Feature: domain Description: PRK09409 Location: 4-163 bp Feature: gene Location: 286-507 bp Feature: domain Description: Tra5 Location: 298-490 bp Feature: domain Description: Tra5 Location: 298-490 bp Feature: gene Location: 520-1647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 820-1477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 820-1477 bp Feature: gene Location: 1946-2473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1952-2096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1952-2096 bp Feature: domain Description: GIIM Note: maturase Location: 2180-2396 bp Feature: domain Description: GIIM Note: maturase Location: 2180-23 96 bp Feature: gene Location: 2826-3068 bp Feature: gene Location: 2980-4599 bp Feature: domain Description: ushA Location: 2995-4597 bp Feature: domain Description: ushA Location: 2995-4597 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09409 (IS2 transposase TnpB; Reviewed), RVT-GII, GIIM (pfam08388), Tra5 (COG2801)