myRT

myRT report for GCA_900485245.1_18787_4_12

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Seq: UDRV01000017.1 Shigella flexneri strain 4028STDY6274925 genome assembly, contig: ERS1017554SCcontig000017, whole genome shotgun sequence (56384 bp)
Overview 1 RT 1: 3260-10676 bp Neighborhood of RT #1 [3260, 10678] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3260-3388 bp Feature: gene Location: 3478-3717 bp Feature: domain Description: PHA02517 Location: 3481-3652 bp Feature: domain Description: PHA0251 7 Location: 3481 -3652 bp Feature: gene Location: 4309-5832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582-5314 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4582-531 4 bp Feature: domain Description: GIIM Note: maturase Location: 5389-5587 bp Feature: domain Description: GIIM Note: maturase Location: 5389-5587 bp Feature: gene Location: 6009-6395 bp Feature: domain Description: PHA02517 Location: 6012-6393 bp Feature: domain Description: PHA0251 7 Location: 601 2-6393 bp Feature: gene Location: 6560-10678 bp Feature: domain Description: ESPR Location: 6563-6632 bp Feature: domain Description: ESPR Location: 6563-6632 bp Feature: domain Description: Peptidase_S6 Location: 6713-8885 bp Feature: domain Description: Peptidase_S6 Location: 671 3-8885 bp Feature: domain Description: autotrans_barl Location: 9449-10676 bp Feature: domain Description: autotrans_barl Location: 9449-1 0676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDRV01000167.1 Shigella flexneri strain 4028STDY6274925 genome assembly, contig: ERS1017554SCcontig000167, whole genome shotgun sequence (5955 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDRV01000172.1 Shigella flexneri strain 4028STDY6274925 genome assembly, contig: ERS1017554SCcontig000172, whole genome shotgun sequence (5633 bp)
Overview 1 RT 1: 317-3452 bp Neighborhood of RT #1 [317, 3452] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 317-1066 bp Feature: domain Description: PAP2_acid_phosphatase Location: 392-1046 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3 92-1046 bp Feature: gene Location: 1462-1662 bp Feature: domain Description: Tra5 Location: 1471-1645 bp Feature: domain Description: Tra5 Location: 1471-1645 bp Feature: gene Location: 1675-2478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1975-2470 bp Feature: gene Location: 2531-2857 bp Feature: domain Description: GIIM Note: maturase Location: 2564-2783 bp Feature: domain Description: GIIM Note: maturase Location: 2564-2783 bp Feature: gene Location: 3210-3452 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)