myRT

myRT report for GCA_900485315.1_19536_5_94

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Seq: UIOM01000197.1 Shigella sonnei strain 4028STDY6329963 genome assembly, contig: ERS1078820SCcontig000197, whole genome shotgun sequence (5421 bp)
Overview 1 RT 1: 2-4616 bp Neighborhood of RT #1 [2, 4618] PRK09409 Tra5 RVT-GII RVT-GII GIIM ushA Feature: gene Location: 2-184 bp Feature: domain Description: PRK09409 Location: 5-182 bp Feature: domain Description: PRK09409 Location: 5-1 82 bp Feature: gene Location: 305-526 bp Feature: domain Description: Tra5 Location: 317-509 bp Feature: domain Description: Tra5 Location: 31 7-509 bp Feature: gene Location: 539-1666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 839-1 496 bp Feature: gene Location: 1965-2492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1971-2115 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 971 -21 1 5 bp Feature: domain Description: GIIM Note: maturase Location: 2199-2415 bp Feature: domain Description: GIIM Note: maturase Location: 21 99-241 5 bp Feature: gene Location: 2845-3087 bp Feature: gene Location: 2999-4618 bp Feature: domain Description: ushA Location: 3014-4616 bp Feature: domain Description: ushA Location: 301 4-461 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Tra5 (COG2801), ushA (PRK09558)

Seq: UIOM01000193.1 Shigella sonnei strain 4028STDY6329963 genome assembly, contig: ERS1078820SCcontig000193, whole genome shotgun sequence (5954 bp)
Overview 1 RT 1: 3386-5365 bp Neighborhood of RT #1 [3386, 5391] COG3547 RVT-GII GIIM RVT-GII Feature: gene Location: 3386-3871 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: domain Description: COG3547 Location: 3404-3836 bp Feature: gene Location: 3967-4134 bp Feature: gene Location: 4160-4687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4166-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: domain Description: GIIM Note: maturase Location: 4388-4610 bp Feature: gene Location: 4702-5391 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4903-5365 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIOM01000157.1 Shigella sonnei strain 4028STDY6329963 genome assembly, contig: ERS1078820SCcontig000157, whole genome shotgun sequence (8848 bp)
Overview 1 RT 1: 4441-7738 bp Neighborhood of RT #1 [4441, 7806] HTH_23 HTH_33 DDE_3 HTH_23 InsE RVT-GII DDE_Tnp_1 Feature: gene Location: 4441-5472 bp Feature: domain Description: HTH_23 Location: 4519-4660 bp Feature: domain Description: HTH_23 Location: 4519-4660 bp Feature: domain Description: HTH_33 Location: 4765-4912 bp Feature: domain Description: HTH_3 3 Location: 4765-4912 bp Feature: domain Description: DDE_3 Location: 4969-5389 bp Feature: domain Description: DDE_3 Location: 4969-53 89 bp Feature: gene Location: 5616-6284 bp Feature: domain Description: HTH_23 Location: 5724-5811 bp Feature: domain Description: HTH_23 Location: 5724-5811 bp Feature: domain Description: InsE Location: 5940-6135 bp Feature: domain Description: InsE Location: 5940-613 5 bp Feature: gene Location: 6378-6638 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6381-6612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 81-6612 bp Feature: gene Location: 6648-7076 bp Feature: gene Location: 7090-7806 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-7738 bp Feature: domain Description: DDE_Tnp_1 Location: 7096-773 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_33 (pfam13592), DDE_3 (pfam13358), InsE (COG2963), RVT-GII, DDE_Tnp_1 (pfam01609)

Seq: UIOM01000001.1 Shigella sonnei strain 4028STDY6329963 genome assembly, contig: ERS1078820SCcontig000001, whole genome shotgun sequence (99302 bp)
Overview 1 RT 1: 45636-50075 bp 2 RT 2: 53275-57927 bp Neighborhood of RT #1 [45636, 50075] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #2 [53275, 57938] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc DinI Feature: gene Location: 45636-45869 bp Feature: domain Description: DUF905 Location: 45666-45864 bp Feature: domain Description: DUF905 Location: 4 5666-4 5864 bp Feature: gene Location: 45927-46367 bp Feature: domain Description: PRK13732 Location: 45933-46365 bp Feature: domain Description: PRK13732 Location: 4 5933-4 6365 bp Feature: gene Location: 46562-48463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46829-47660 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 6829-4 7660 bp Feature: domain Description: Intron_maturas2 Location: 47774-48032 bp Feature: domain Description: Intron_maturas2 Location: 4 7774 -4 8032 bp Feature: domain Description: HNHc Note: nucleases Location: 48206-48368 bp Feature: domain Description: HNHc Note: nucleases Location: 4 8206-4 8368 bp Feature: gene Location: 49007-49693 bp Feature: gene Location: 49884-50075 bp Feature: gene Location: 53275-53871 bp Feature: gene Location: 53941-54843 bp Feature: domain Description: DUF1281 Location: 54010-54538 bp Feature: domain Description: DUF1281 Location: 54 010-54 538 bp Feature: domain Description: DUF1281_C Location: 54544-54784 bp Feature: domain Description: DUF1281_C Location: 54 54 4 -54 784 bp Feature: gene Location: 54920-56644 bp Feature: RT Description: RVT_N Location: 54977-55214 bp Feature: RT Description: RVT_N Location: 54 977-55214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55265-55913 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55265-55913 bp Feature: domain Description: YkfC Location: 56045-56201 bp Feature: domain Description: YkfC Location: 5604 5-56201 bp Feature: domain Description: HNHc Note: nucleases Location: 56429-56588 bp Feature: domain Description: HNHc Note: nucleases Location: 564 29-56588 bp Feature: gene Location: 56685-56825 bp Feature: gene Location: 57690-57938 bp Feature: domain Description: DinI Location: 57747-57927 bp Feature: domain Description: DinI Location: 5774 7-57927 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), YkfC (COG3344), DinI (pfam06183)