myRT

myRT report for GCA_900485395.1_18787_5_24

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Seq: UIOZ01000169.1 Shigella flexneri strain 4028STDY6275033 genome assembly, contig: ERS1017642SCcontig000169, whole genome shotgun sequence (5835 bp)
Overview 1 RT 1: 527-3662 bp Neighborhood of RT #1 [527, 3662] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 527-1276 bp Feature: domain Description: PAP2_acid_phosphatase Location: 602-1256 bp Feature: domain Description: PAP2_acid_phosphatase Location: 602-1 256 bp Feature: gene Location: 1672-1872 bp Feature: domain Description: Tra5 Location: 1681-1855 bp Feature: domain Description: Tra5 Location: 1 681 -1 855 bp Feature: gene Location: 1885-2688 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2185-2680 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 85-2680 bp Feature: gene Location: 2741-3067 bp Feature: domain Description: GIIM Note: maturase Location: 2774-2993 bp Feature: domain Description: GIIM Note: maturase Location: 2774-2993 bp Feature: gene Location: 3420-3662 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UIOZ01000145.1 Shigella flexneri strain 4028STDY6275033 genome assembly, contig: ERS1017642SCcontig000145, whole genome shotgun sequence (7986 bp)
Overview 1 RT 1: 961-7983 bp Neighborhood of RT #1 [961, 7983] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 961-5079 bp Feature: domain Description: ESPR Location: 964-1033 bp Feature: domain Description: ESPR Location: 964-1033 bp Feature: domain Description: Peptidase_S6 Location: 1114-3286 bp Feature: domain Description: Peptidase_S6 Location: 1114-32 86 bp Feature: domain Description: autotrans_barl Location: 3850-5077 bp Feature: domain Description: autotrans_barl Location: 3850-5077 bp Feature: gene Location: 5244-5630 bp Feature: domain Description: PHA02517 Location: 5247-5628 bp Feature: domain Description: PHA02 517 Location: 52 47-562 8 bp Feature: gene Location: 5807-7330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6080-6812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6080-6812 bp Feature: domain Description: GIIM Note: maturase Location: 6887-7085 bp Feature: domain Description: GIIM Note: maturase Location: 6887-7085 bp Feature: gene Location: 7624-7983 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIOZ01000083.1 Shigella flexneri strain 4028STDY6275033 genome assembly, contig: ERS1017642SCcontig000083, whole genome shotgun sequence (17922 bp)
Overview 1 RT 1: 15272-17893 bp Neighborhood of RT #1 [15272, 17919] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 15272-15757 bp Feature: domain Description: COG3547 Location: 15290-15743 bp Feature: domain Description: COG3 547 Location: 15290-15743 bp Feature: gene Location: 15853-16020 bp Feature: gene Location: 16046-17263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16232-16886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623 2-16886 bp Feature: domain Description: GIIM Note: maturase Location: 16964-17186 bp Feature: domain Description: GIIM Note: maturase Location: 16964-17186 bp Feature: gene Location: 17274-17657 bp Feature: gene Location: 17740-17919 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17743-17893 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17743 -17893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)