myRT

myRT report for GCA_900485405.1_18787_4_53

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Seq: UIOT01000089.1 Shigella flexneri strain 4028STDY6274966 genome assembly, contig: ERS1017595SCcontig000089, whole genome shotgun sequence (15419 bp)
Overview 1 RT 1: 12769-15390 bp Neighborhood of RT #1 [12769, 15416] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 12769-13254 bp Feature: domain Description: COG3547 Location: 12787-13240 bp Feature: domain Description: COG3547 Location: 1 2787-1 3240 bp Feature: gene Location: 13350-13517 bp Feature: gene Location: 13543-14760 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13729-14383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3729-1 4383 bp Feature: domain Description: GIIM Note: maturase Location: 14461-14683 bp Feature: domain Description: GIIM Note: maturase Location: 1 4461 -1 4683 bp Feature: gene Location: 14771-15154 bp Feature: gene Location: 15237-15416 bp Feature: domain Description: DDE_Tnp_IS66 Location: 15240-15390 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 5240-1 5390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UIOT01000143.1 Shigella flexneri strain 4028STDY6274966 genome assembly, contig: ERS1017595SCcontig000143, whole genome shotgun sequence (7701 bp)
Overview 1 RT 1: 2675-6569 bp Neighborhood of RT #1 [2675, 6580] InsE PHA02517 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C PHA02517 Feature: gene Location: 2675-2977 bp Feature: domain Description: InsE Location: 2684-2966 bp Feature: domain Description: InsE Location: 2 684-2 966 bp Feature: gene Location: 3004-3429 bp Feature: domain Description: PHA02517 Location: 3028-3364 bp Feature: domain Description: PHA02 517 Location: 302 8-3364 bp Feature: gene Location: 4021-5544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4294-5026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 94-502 6 bp Feature: domain Description: GIIM Note: maturase Location: 5101-5299 bp Feature: domain Description: GIIM Note: maturase Location: 5101-52 99 bp Feature: gene Location: 5651-6160 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5666-6008 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5666-6008 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 6029-6140 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 602 9-6140 bp Feature: gene Location: 6206-6580 bp Feature: domain Description: PHA02517 Location: 6209-6569 bp Feature: domain Description: PHA02 517 Location: 62 09-6569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)

Seq: UIOT01000156.1 Shigella flexneri strain 4028STDY6274966 genome assembly, contig: ERS1017595SCcontig000156, whole genome shotgun sequence (6273 bp)
Overview 1 RT 1: 968-4103 bp Neighborhood of RT #1 [968, 4103] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 968-1717 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1043-1697 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1043 -1697 bp Feature: gene Location: 2113-2313 bp Feature: domain Description: Tra5 Location: 2122-2296 bp Feature: domain Description: Tra5 Location: 2122-2296 bp Feature: gene Location: 2326-3129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2626-3121 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2626-3 121 bp Feature: gene Location: 3182-3508 bp Feature: domain Description: GIIM Note: maturase Location: 3215-3434 bp Feature: domain Description: GIIM Note: maturase Location: 3 215-3 43 4 bp Feature: gene Location: 3861-4103 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)