myRT

myRT report for GCA_900485415.1_18787_5_12

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Seq: UIPB01000173.1 Shigella flexneri strain 4028STDY6275021 genome assembly, contig: ERS1017618SCcontig000173, whole genome shotgun sequence (5604 bp)
Overview 1 RT 1: 323-3458 bp Neighborhood of RT #1 [323, 3458] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 323-1072 bp Feature: domain Description: PAP2_acid_phosphatase Location: 398-1052 bp Feature: domain Description: PAP2_acid_phosphatase Location: 398-1 052 bp Feature: gene Location: 1468-1668 bp Feature: domain Description: Tra5 Location: 1477-1651 bp Feature: domain Description: Tra5 Location: 1 477-1 651 bp Feature: gene Location: 1681-2484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1981-2476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 981 -2476 bp Feature: gene Location: 2537-2863 bp Feature: domain Description: GIIM Note: maturase Location: 2570-2789 bp Feature: domain Description: GIIM Note: maturase Location: 2570-2789 bp Feature: gene Location: 3216-3458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UIPB01000013.1 Shigella flexneri strain 4028STDY6275021 genome assembly, contig: ERS1017618SCcontig000013, whole genome shotgun sequence (61678 bp)
Overview 1 RT 1: 544-4246 bp Neighborhood of RT #1 [544, 4260] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 544-891 bp Feature: domain Description: TnpB_IS66 Location: 571-862 bp Feature: domain Description: TnpB_IS66 Location: 571-862 bp Feature: gene Location: 911-1792 bp Feature: domain Description: COG3436 Location: 1220-1694 bp Feature: domain Description: COG3436 Location: 12 2 0-1694 bp Feature: gene Location: 2269-3486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2455-3109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 455-3109 bp Feature: domain Description: GIIM Note: maturase Location: 3187-3409 bp Feature: domain Description: GIIM Note: maturase Location: 3187-3409 bp Feature: gene Location: 3602-3748 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3614-3725 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 3614-372 5 bp Feature: gene Location: 3775-4260 bp Feature: domain Description: COG3547 Location: 3793-4246 bp Feature: domain Description: COG3547 Location: 3793-42 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), TnpB_IS66 (pfam05717), COG3436 (Transposase )

Seq: UIPB01000097.1 Shigella flexneri strain 4028STDY6275021 genome assembly, contig: ERS1017618SCcontig000097, whole genome shotgun sequence (13648 bp)
Overview 1 RT 1: 969-8290 bp Neighborhood of RT #1 [969, 8355] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 969-5087 bp Feature: domain Description: ESPR Location: 972-1041 bp Feature: domain Description: ESPR Location: 972-1041 bp Feature: domain Description: Peptidase_S6 Location: 1122-3294 bp Feature: domain Description: Peptidase_S6 Location: 1122-3 294 bp Feature: domain Description: autotrans_barl Location: 3858-5085 bp Feature: domain Description: autotrans_barl Location: 3 858-5085 bp Feature: gene Location: 5252-5638 bp Feature: domain Description: PHA02517 Location: 5255-5636 bp Feature: domain Description: PHA02517 Location: 5255-563 6 bp Feature: gene Location: 5815-7338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6088-6820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6088-6820 bp Feature: domain Description: GIIM Note: maturase Location: 6895-7093 bp Feature: domain Description: GIIM Note: maturase Location: 6895-7093 bp Feature: gene Location: 7292-7717 bp Feature: gene Location: 7930-8355 bp Feature: domain Description: PHA02517 Location: 7954-8290 bp Feature: domain Description: PHA02517 Location: 7954-8290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)