myRT

myRT report for GCA_900485445.1_18787_4_77

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Seq: UDSC01000079.1 Shigella flexneri strain 4028STDY6274990 genome assembly, contig: ERS1017643SCcontig000079, whole genome shotgun sequence (17694 bp)
Overview 1 RT 1: 15044-17665 bp Neighborhood of RT #1 [15044, 17691] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 15044-15529 bp Feature: domain Description: COG3547 Location: 15062-15515 bp Feature: domain Description: COG3547 Location: 1 5062-1 551 5 bp Feature: gene Location: 15625-15792 bp Feature: gene Location: 15818-17035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16004-16658 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6004-1 6658 bp Feature: domain Description: GIIM Note: maturase Location: 16736-16958 bp Feature: domain Description: GIIM Note: maturase Location: 1 6736-1 6958 bp Feature: gene Location: 17046-17429 bp Feature: gene Location: 17512-17691 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17515-17665 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 751 5-1 7665 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDSC01000159.1 Shigella flexneri strain 4028STDY6274990 genome assembly, contig: ERS1017643SCcontig000159, whole genome shotgun sequence (6250 bp)
Overview 1 RT 1: 2561-5262 bp Neighborhood of RT #1 [2561, 5282] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2561-2716 bp Feature: gene Location: 2742-3113 bp Feature: domain Description: GIIM Note: maturase Location: 2820-3039 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 0-3039 bp Feature: gene Location: 3121-3924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3421-3916 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 1-3916 bp Feature: gene Location: 3937-4137 bp Feature: domain Description: Tra5 Location: 3946-4120 bp Feature: domain Description: Tra5 Location: 3946-412 0 bp Feature: gene Location: 4533-5282 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4608-5262 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 4608-52 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDSC01000191.1 Shigella flexneri strain 4028STDY6274990 genome assembly, contig: ERS1017643SCcontig000191, whole genome shotgun sequence (3870 bp)
Overview 1 RT 1: 858-3533 bp Neighborhood of RT #1 [858, 3778] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 858-1184 bp Feature: domain Description: InsE Location: 861-1182 bp Feature: domain Description: InsE Location: 861-1182 bp Feature: gene Location: 1181-1663 bp Feature: domain Description: PHA02517 Location: 1244-1598 bp Feature: domain Description: PHA02517 Location: 1244-1598 bp Feature: gene Location: 2255-3778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2528-3260 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2528-3 260 bp Feature: domain Description: GIIM Note: maturase Location: 3335-3533 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 3 5-3 53 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)