myRT

myRT report for GCA_900485455.1_18787_5_16

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Seq: UDSD01000092.1 Shigella flexneri strain 4028STDY6275025 genome assembly, contig: ERS1017626SCcontig000092, whole genome shotgun sequence (14217 bp)
Overview 1 RT 1: 520-8488 bp Neighborhood of RT #1 [520, 8520] PAP2_acid_phosphatase Tra5 RVT-GII GIIM ushA PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 520-1269 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1249 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1 249 bp Feature: gene Location: 1665-1865 bp Feature: domain Description: Tra5 Location: 1674-1848 bp Feature: domain Description: Tra5 Location: 1 674-1 848 bp Feature: gene Location: 1878-2681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 78-2673 bp Feature: gene Location: 2734-3060 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: gene Location: 3413-3655 bp Feature: gene Location: 3567-5219 bp Feature: domain Description: ushA Location: 3579-5217 bp Feature: domain Description: ushA Location: 3579-521 7 bp Feature: gene Location: 5560-6006 bp Feature: domain Description: PHA02517 Location: 5563-6004 bp Feature: domain Description: PHA0251 7 Location: 5563-6004 bp Feature: gene Location: 6123-7646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6396-7128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6396-71 28 bp Feature: domain Description: GIIM Note: maturase Location: 7203-7401 bp Feature: domain Description: GIIM Note: maturase Location: 7203-7401 bp Feature: gene Location: 7600-8025 bp Feature: gene Location: 8263-8520 bp Feature: domain Description: PHA02517 Location: 8269-8488 bp Feature: domain Description: PHA0251 7 Location: 8269-8488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), ushA (PRK09558), PHA02517 (putative transposase OrfB; Reviewed)

Seq: UDSD01000085.1 Shigella flexneri strain 4028STDY6275025 genome assembly, contig: ERS1017626SCcontig000085, whole genome shotgun sequence (17014 bp)
Overview 1 RT 1: 14262-16915 bp Neighborhood of RT #1 [14262, 16915] COG3547 RVT-GII GIIM Feature: gene Location: 14262-14747 bp Feature: domain Description: COG3547 Location: 14280-14733 bp Feature: domain Description: COG3547 Location: 142 80-14733 bp Feature: gene Location: 14843-15010 bp Feature: gene Location: 15036-16253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 2 2 -15876 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: gene Location: 16264-16647 bp Feature: gene Location: 16721-16915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)