myRT

myRT report for GCA_900485465.1_18787_5_31

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Seq: UIOY01000159.1 Shigella flexneri strain 4028STDY6275040 genome assembly, contig: ERS1017656SCcontig000159, whole genome shotgun sequence (6483 bp)
Overview 1 RT 1: 1167-4302 bp Neighborhood of RT #1 [1167, 4302] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1167-1916 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1242-1896 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 242-1 896 bp Feature: gene Location: 2312-2512 bp Feature: domain Description: Tra5 Location: 2321-2495 bp Feature: domain Description: Tra5 Location: 2321 -2495 bp Feature: gene Location: 2525-3328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2825-3320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2825-3320 bp Feature: gene Location: 3381-3707 bp Feature: domain Description: GIIM Note: maturase Location: 3414-3633 bp Feature: domain Description: GIIM Note: maturase Location: 341 4-3633 bp Feature: gene Location: 4060-4302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UIOY01000155.1 Shigella flexneri strain 4028STDY6275040 genome assembly, contig: ERS1017656SCcontig000155, whole genome shotgun sequence (7061 bp)
Overview 1 RT 1: 4306-6959 bp Neighborhood of RT #1 [4306, 6959] COG3547 RVT-GII GIIM Feature: gene Location: 4306-4791 bp Feature: domain Description: COG3547 Location: 4324-4777 bp Feature: domain Description: COG3547 Location: 432 4-4777 bp Feature: gene Location: 4887-5054 bp Feature: gene Location: 5080-6297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5266-5920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 66-592 0 bp Feature: domain Description: GIIM Note: maturase Location: 5998-6220 bp Feature: domain Description: GIIM Note: maturase Location: 5998-62 2 0 bp Feature: gene Location: 6308-6691 bp Feature: gene Location: 6765-6959 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIOY01000147.1 Shigella flexneri strain 4028STDY6275040 genome assembly, contig: ERS1017656SCcontig000147, whole genome shotgun sequence (7987 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02517 Location: 23 60-2741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3 061-523 3 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)