myRT

myRT report for GCA_900485475.1_18787_4_92

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Seq: UDSL01000160.1 Shigella flexneri strain 4028STDY6275005 genome assembly, contig: ERS1017672SCcontig000160, whole genome shotgun sequence (6252 bp)
Overview 1 RT 1: 971-4106 bp Neighborhood of RT #1 [971, 4106] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 971-1720 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1046-1700 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 046-1 700 bp Feature: gene Location: 2116-2316 bp Feature: domain Description: Tra5 Location: 2125-2299 bp Feature: domain Description: Tra5 Location: 21 25-2299 bp Feature: gene Location: 2329-3132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629-3124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629-31 24 bp Feature: gene Location: 3185-3511 bp Feature: domain Description: GIIM Note: maturase Location: 3218-3437 bp Feature: domain Description: GIIM Note: maturase Location: 321 8-3437 bp Feature: gene Location: 3864-4106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDSL01000021.1 Shigella flexneri strain 4028STDY6275005 genome assembly, contig: ERS1017672SCcontig000021, whole genome shotgun sequence (54697 bp)
Overview 1 RT 1: 1573-8989 bp Neighborhood of RT #1 [1573, 8991] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1573-1701 bp Feature: gene Location: 1791-2030 bp Feature: domain Description: PHA02517 Location: 1794-1965 bp Feature: domain Description: PHA02 517 Location: 1794-1965 bp Feature: gene Location: 2622-4145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2895-3627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 895-362 7 bp Feature: domain Description: GIIM Note: maturase Location: 3702-3900 bp Feature: domain Description: GIIM Note: maturase Location: 3702 -3900 bp Feature: gene Location: 4322-4708 bp Feature: domain Description: PHA02517 Location: 4325-4706 bp Feature: domain Description: PHA02 517 Location: 432 5-4706 bp Feature: gene Location: 4873-8991 bp Feature: domain Description: ESPR Location: 4876-4945 bp Feature: domain Description: ESPR Location: 4876-4945 bp Feature: domain Description: Peptidase_S6 Location: 5026-7198 bp Feature: domain Description: Peptidase_S6 Location: 502 6-7198 bp Feature: domain Description: autotrans_barl Location: 7762-8989 bp Feature: domain Description: autotrans_barl Location: 7762 -8989 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDSL01000153.1 Shigella flexneri strain 4028STDY6275005 genome assembly, contig: ERS1017672SCcontig000153, whole genome shotgun sequence (7057 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)