myRT

myRT report for GCA_900485485.1_18787_4_35

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Seq: UDTD01000023.1 Shigella flexneri strain 4028STDY6274948 genome assembly, contig: ERS1017577SCcontig000023, whole genome shotgun sequence (54795 bp)
Overview 1 RT 1: 45729-52906 bp Neighborhood of RT #1 [45729, 52971] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 45729-49847 bp Feature: domain Description: ESPR Location: 45732-45801 bp Feature: domain Description: ESPR Location: 45732-45801 bp Feature: domain Description: Peptidase_S6 Location: 45882-48054 bp Feature: domain Description: Peptidase_S6 Location: 45882-48054 bp Feature: domain Description: autotrans_barl Location: 48618-49845 bp Feature: domain Description: autotrans_barl Location: 4861 8-49845 bp Feature: gene Location: 50012-50398 bp Feature: domain Description: PHA02517 Location: 50015-50396 bp Feature: domain Description: PHA0251 7 Location: 5001 5-50396 bp Feature: gene Location: 50575-52098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50848-51580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50848-51 580 bp Feature: domain Description: GIIM Note: maturase Location: 51655-51853 bp Feature: domain Description: GIIM Note: maturase Location: 51 655-51 853 bp Feature: gene Location: 52052-52477 bp Feature: gene Location: 52690-52971 bp Feature: domain Description: PHA02517 Location: 52696-52906 bp Feature: domain Description: PHA0251 7 Location: 52696-52906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDTD01000083.1 Shigella flexneri strain 4028STDY6274948 genome assembly, contig: ERS1017577SCcontig000083, whole genome shotgun sequence (16989 bp)
Overview 1 RT 1: 14234-16887 bp Neighborhood of RT #1 [14234, 16887] COG3547 RVT-GII GIIM Feature: gene Location: 14234-14719 bp Feature: domain Description: COG3547 Location: 14252-14705 bp Feature: domain Description: COG3547 Location: 142 52 -14705 bp Feature: gene Location: 14815-14982 bp Feature: gene Location: 15008-16225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15194-15848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15194-15848 bp Feature: domain Description: GIIM Note: maturase Location: 15926-16148 bp Feature: domain Description: GIIM Note: maturase Location: 1592 6-16148 bp Feature: gene Location: 16236-16619 bp Feature: gene Location: 16693-16887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDTD01000166.1 Shigella flexneri strain 4028STDY6274948 genome assembly, contig: ERS1017577SCcontig000166, whole genome shotgun sequence (6182 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3 120 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 3 214-3 43 3 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)