myRT

myRT report for GCA_900485495.1_18787_4_60

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Seq: UDSP01000182.1 Shigella flexneri strain 4028STDY6274973 genome assembly, contig: ERS1017609SCcontig000182, whole genome shotgun sequence (4880 bp)
Overview 1 RT 1: 134-2699 bp Neighborhood of RT #1 [134, 2699] Tra5 RVT-GII GIIM Feature: gene Location: 134-313 bp Feature: gene Location: 709-909 bp Feature: domain Description: Tra5 Location: 718-892 bp Feature: domain Description: Tra5 Location: 71 8-892 bp Feature: gene Location: 922-1725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 222-1 71 7 bp Feature: gene Location: 1778-2104 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2030 bp Feature: domain Description: GIIM Note: maturase Location: 1 81 1 -2030 bp Feature: gene Location: 2457-2699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: UDSP01000143.1 Shigella flexneri strain 4028STDY6274973 genome assembly, contig: ERS1017609SCcontig000143, whole genome shotgun sequence (8607 bp)
Overview 1 RT 1: 176-2761 bp Neighborhood of RT #1 [176, 2775] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 176-307 bp Feature: domain Description: DDE_Tnp_IS66 Location: 188-281 bp Feature: domain Description: DDE_Tnp_IS66 Location: 188-2 81 bp Feature: gene Location: 868-2001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970-1624 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 970-162 4 bp Feature: domain Description: GIIM Note: maturase Location: 1702-1924 bp Feature: domain Description: GIIM Note: maturase Location: 1702 -192 4 bp Feature: gene Location: 2117-2263 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2129-2240 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 12 9-2 2 40 bp Feature: gene Location: 2290-2775 bp Feature: domain Description: COG3547 Location: 2308-2761 bp Feature: domain Description: COG3547 Location: 2 308-2 761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDSP01000028.1 Shigella flexneri strain 4028STDY6274973 genome assembly, contig: ERS1017609SCcontig000028, whole genome shotgun sequence (42105 bp)
Overview 1 RT 1: 1223-5282 bp Neighborhood of RT #1 [1223, 5305] InsE PHA02517 RVT-GII GIIM PHA02517 DDE_Tnp_IS66 DDE_Tnp_IS66_C Feature: gene Location: 1223-1549 bp Feature: domain Description: InsE Location: 1226-1547 bp Feature: domain Description: InsE Location: 1226-1547 bp Feature: gene Location: 1747-2028 bp Feature: domain Description: PHA02517 Location: 1753-1963 bp Feature: domain Description: PHA02517 Location: 1753 -1963 bp Feature: gene Location: 2620-4143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2893-3625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2893 -3 625 bp Feature: domain Description: GIIM Note: maturase Location: 3700-3898 bp Feature: domain Description: GIIM Note: maturase Location: 3 700-3 898 bp Feature: gene Location: 4260-4829 bp Feature: domain Description: PHA02517 Location: 4263-4668 bp Feature: domain Description: PHA02517 Location: 4263 -4668 bp Feature: gene Location: 4946-5305 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4955-5150 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4955-5150 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5174-5282 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 5174-5282 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)