myRT

myRT report for GCA_900485505.1_18787_5_22

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Seq: UIOS01000118.1 Shigella flexneri strain 4028STDY6275031 genome assembly, contig: ERS1017638SCcontig000118, whole genome shotgun sequence (10660 bp)
Overview 1 RT 1: 7905-10558 bp Neighborhood of RT #1 [7905, 10558] COG3547 RVT-GII GIIM Feature: gene Location: 7905-8390 bp Feature: domain Description: COG3547 Location: 7923-8376 bp Feature: domain Description: COG3547 Location: 7923-8376 bp Feature: gene Location: 8486-8653 bp Feature: gene Location: 8679-9896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8865-9519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8865-951 9 bp Feature: domain Description: GIIM Note: maturase Location: 9597-9819 bp Feature: domain Description: GIIM Note: maturase Location: 9597-981 9 bp Feature: gene Location: 9907-10290 bp Feature: gene Location: 10364-10558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIOS01000132.1 Shigella flexneri strain 4028STDY6275031 genome assembly, contig: ERS1017638SCcontig000132, whole genome shotgun sequence (9584 bp)
Overview 1 RT 1: 964-8316 bp Neighborhood of RT #1 [964, 8351] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 964-5082 bp Feature: domain Description: ESPR Location: 967-1036 bp Feature: domain Description: ESPR Location: 967-1036 bp Feature: domain Description: Peptidase_S6 Location: 1117-3289 bp Feature: domain Description: Peptidase_S6 Location: 1117-32 89 bp Feature: domain Description: autotrans_barl Location: 3853-5080 bp Feature: domain Description: autotrans_barl Location: 3853-5080 bp Feature: gene Location: 5247-5633 bp Feature: domain Description: PHA02517 Location: 5250-5631 bp Feature: domain Description: PHA02 517 Location: 52 50-5631 bp Feature: gene Location: 5810-7333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083-6815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083-6815 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: gene Location: 7287-7712 bp Feature: gene Location: 7950-8351 bp Feature: domain Description: PHA02517 Location: 7974-8316 bp Feature: domain Description: PHA02 517 Location: 7974-8316 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIOS01000163.1 Shigella flexneri strain 4028STDY6275031 genome assembly, contig: ERS1017638SCcontig000163, whole genome shotgun sequence (6256 bp)
Overview 1 RT 1: 970-4105 bp Neighborhood of RT #1 [970, 4105] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 970-1719 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1045-1699 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1045-1699 bp Feature: gene Location: 2115-2315 bp Feature: domain Description: Tra5 Location: 2124-2298 bp Feature: domain Description: Tra5 Location: 2124-2298 bp Feature: gene Location: 2328-3131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2628-3123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2628-3 123 bp Feature: gene Location: 3184-3510 bp Feature: domain Description: GIIM Note: maturase Location: 3217-3436 bp Feature: domain Description: GIIM Note: maturase Location: 3 217-3 43 6 bp Feature: gene Location: 3863-4105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)