myRT

myRT report for GCA_900485565.1_18787_5_8

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Seq: UDSS01000146.1 Shigella flexneri strain 4028STDY6275017 genome assembly, contig: ERS1017610SCcontig000146, whole genome shotgun sequence (8563 bp)
Overview 1 RT 1: 2-7587 bp Neighborhood of RT #1 [2, 7589] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 2-175 bp Feature: domain Description: InsE Location: 5-164 bp Feature: domain Description: InsE Location: 5-1 64 bp Feature: gene Location: 202-603 bp Feature: domain Description: PHA02517 Location: 226-568 bp Feature: domain Description: PHA0251 7 Location: 226-568 bp Feature: gene Location: 1220-2743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493-2225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 493-2225 bp Feature: domain Description: GIIM Note: maturase Location: 2300-2498 bp Feature: domain Description: GIIM Note: maturase Location: 2300-2498 bp Feature: gene Location: 2920-3306 bp Feature: domain Description: PHA02517 Location: 2923-3304 bp Feature: domain Description: PHA0251 7 Location: 2923-3304 bp Feature: gene Location: 3471-7589 bp Feature: domain Description: ESPR Location: 3474-3543 bp Feature: domain Description: ESPR Location: 3474-3543 bp Feature: domain Description: Peptidase_S6 Location: 3624-5796 bp Feature: domain Description: Peptidase_S6 Location: 3624-5796 bp Feature: domain Description: autotrans_barl Location: 6360-7587 bp Feature: domain Description: autotrans_barl Location: 6360-7587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDSS01000175.1 Shigella flexneri strain 4028STDY6275017 genome assembly, contig: ERS1017610SCcontig000175, whole genome shotgun sequence (5805 bp)
Overview 1 RT 1: 516-3651 bp Neighborhood of RT #1 [516, 3651] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 516-1265 bp Feature: domain Description: PAP2_acid_phosphatase Location: 591-1245 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 591-12 45 bp Feature: gene Location: 1661-1861 bp Feature: domain Description: Tra5 Location: 1670-1844 bp Feature: domain Description: Tra5 Location: 1670-1844 bp Feature: gene Location: 1874-2677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2174-2669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 174-2 669 bp Feature: gene Location: 2730-3056 bp Feature: domain Description: GIIM Note: maturase Location: 2763-2982 bp Feature: domain Description: GIIM Note: maturase Location: 2 763-2 982 bp Feature: gene Location: 3409-3651 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDSS01000084.1 Shigella flexneri strain 4028STDY6275017 genome assembly, contig: ERS1017610SCcontig000084, whole genome shotgun sequence (17017 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)