myRT

myRT report for GCA_900485575.1_18787_5_7

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Seq: UDSQ01000086.1 Shigella flexneri strain 4028STDY6275016 genome assembly, contig: ERS1017608SCcontig000086, whole genome shotgun sequence (17017 bp)
Overview 1 RT 1: 14262-16915 bp Neighborhood of RT #1 [14262, 16915] COG3547 RVT-GII GIIM Feature: gene Location: 14262-14747 bp Feature: domain Description: COG3547 Location: 14280-14733 bp Feature: domain Description: COG3547 Location: 1 4280-1 4733 bp Feature: gene Location: 14843-15010 bp Feature: gene Location: 15036-16253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5222-1 5876 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: domain Description: GIIM Note: maturase Location: 1 5954-1 61 76 bp Feature: gene Location: 16264-16647 bp Feature: gene Location: 16721-16915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDSQ01000020.1 Shigella flexneri strain 4028STDY6275016 genome assembly, contig: ERS1017608SCcontig000020, whole genome shotgun sequence (54775 bp)
Overview 1 RT 1: 1651-9067 bp Neighborhood of RT #1 [1651, 9069] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1651-1779 bp Feature: gene Location: 1869-2108 bp Feature: domain Description: PHA02517 Location: 1872-2043 bp Feature: domain Description: PHA02 517 Location: 1872 -2 043 bp Feature: gene Location: 2700-4223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2973-3705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 973-3705 bp Feature: domain Description: GIIM Note: maturase Location: 3780-3978 bp Feature: domain Description: GIIM Note: maturase Location: 3780-3978 bp Feature: gene Location: 4400-4786 bp Feature: domain Description: PHA02517 Location: 4403-4784 bp Feature: domain Description: PHA02 517 Location: 4403-4784 bp Feature: gene Location: 4951-9069 bp Feature: domain Description: ESPR Location: 4954-5023 bp Feature: domain Description: ESPR Location: 4954-502 3 bp Feature: domain Description: Peptidase_S6 Location: 5104-7276 bp Feature: domain Description: Peptidase_S6 Location: 5104-72 76 bp Feature: domain Description: autotrans_barl Location: 7840-9067 bp Feature: domain Description: autotrans_barl Location: 7840-9067 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDSQ01000159.1 Shigella flexneri strain 4028STDY6275016 genome assembly, contig: ERS1017608SCcontig000159, whole genome shotgun sequence (6266 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3 120 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 3 214-3 43 3 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)