myRT

myRT report for GCA_900485585.1_18787_5_42

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Seq: UDTN01000003.1 Shigella flexneri strain 4028STDY6275051 genome assembly, contig: ERS1017678SCcontig000003, whole genome shotgun sequence (75904 bp)
Overview 1 RT 1: 70953-73723 bp Neighborhood of RT #1 [70953, 73723] HTH_Tnp_1 PHA02517 RVT-GII GIIM Feature: gene Location: 70953-71141 bp Feature: domain Description: HTH_Tnp_1 Location: 70962-71091 bp Feature: domain Description: HTH_Tnp_1 Location: 70962-71 091 bp Feature: gene Location: 71256-71933 bp Feature: domain Description: PHA02517 Location: 71271-71916 bp Feature: domain Description: PHA0251 7 Location: 71 271 -71 91 6 bp Feature: gene Location: 71946-72749 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72246-72741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 72246-72741 bp Feature: gene Location: 72802-73128 bp Feature: domain Description: GIIM Note: maturase Location: 72835-73054 bp Feature: domain Description: GIIM Note: maturase Location: 72835-73054 bp Feature: gene Location: 73481-73723 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDTN01000119.1 Shigella flexneri strain 4028STDY6275051 genome assembly, contig: ERS1017678SCcontig000119, whole genome shotgun sequence (10954 bp)
Overview 1 RT 1: 7838-10951 bp Neighborhood of RT #1 [7838, 10951] PHA02517 RVT-GII GIIM Feature: gene Location: 7838-8080 bp Feature: gene Location: 8212-8658 bp Feature: domain Description: PHA02517 Location: 8215-8656 bp Feature: domain Description: PHA02 517 Location: 82 15-8656 bp Feature: gene Location: 8775-10298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9048-9780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9048-9780 bp Feature: domain Description: GIIM Note: maturase Location: 9855-10053 bp Feature: domain Description: GIIM Note: maturase Location: 9855-10053 bp Feature: gene Location: 10592-10951 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDTN01000156.1 Shigella flexneri strain 4028STDY6275051 genome assembly, contig: ERS1017678SCcontig000156, whole genome shotgun sequence (7061 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)