myRT

myRT report for GCA_900485605.1_18787_5_82

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Seq: UDSU01000156.1 Shigella flexneri strain 4028STDY6275094 genome assembly, contig: ERS1017721SCcontig000156, whole genome shotgun sequence (6494 bp)
Overview 1 RT 1: 1178-4313 bp Neighborhood of RT #1 [1178, 4313] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1178-1927 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1253-1907 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 253-1 907 bp Feature: gene Location: 2323-2523 bp Feature: domain Description: Tra5 Location: 2332-2506 bp Feature: domain Description: Tra5 Location: 2332-2506 bp Feature: gene Location: 2536-3339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2836-3331 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2836-3331 bp Feature: gene Location: 3392-3718 bp Feature: domain Description: GIIM Note: maturase Location: 3425-3644 bp Feature: domain Description: GIIM Note: maturase Location: 3425-3644 bp Feature: gene Location: 4071-4313 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UDSU01000144.1 Shigella flexneri strain 4028STDY6275094 genome assembly, contig: ERS1017721SCcontig000144, whole genome shotgun sequence (8006 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02 517 Location: 2 360-2 741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 2 911-2 980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3061-52 33 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-702 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: UDSU01000083.1 Shigella flexneri strain 4028STDY6275094 genome assembly, contig: ERS1017721SCcontig000083, whole genome shotgun sequence (17914 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: gene Location: 765-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683 -1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3 547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)