myRT

myRT report for GCA_900485615.1_18787_5_56

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Seq: UDSY01000159.1 Shigella flexneri strain 4028STDY6275065 genome assembly, contig: ERS1017692SCcontig000159, whole genome shotgun sequence (6270 bp)
Overview 1 RT 1: 971-4106 bp Neighborhood of RT #1 [971, 4106] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 971-1720 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1046-1700 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 046-1 700 bp Feature: gene Location: 2116-2316 bp Feature: domain Description: Tra5 Location: 2125-2299 bp Feature: domain Description: Tra5 Location: 21 25-2299 bp Feature: gene Location: 2329-3132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629-3124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2629-31 24 bp Feature: gene Location: 3185-3511 bp Feature: domain Description: GIIM Note: maturase Location: 3218-3437 bp Feature: domain Description: GIIM Note: maturase Location: 321 8-3437 bp Feature: gene Location: 3864-4106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDSY01000146.1 Shigella flexneri strain 4028STDY6275065 genome assembly, contig: ERS1017692SCcontig000146, whole genome shotgun sequence (7999 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02 517 Location: 2 360-2 741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 2 911-2 980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3061-52 33 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-702 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: UDSY01000165.1 Shigella flexneri strain 4028STDY6275065 genome assembly, contig: ERS1017692SCcontig000165, whole genome shotgun sequence (5949 bp)
Overview 1 RT 1: 140-2725 bp Neighborhood of RT #1 [140, 2739] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 140-271 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152-245 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152-245 bp Feature: gene Location: 748-1965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 4-1588 bp Feature: domain Description: GIIM Note: maturase Location: 1666-1888 bp Feature: domain Description: GIIM Note: maturase Location: 1666-1888 bp Feature: gene Location: 2081-2227 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2093-2204 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2093 -2204 bp Feature: gene Location: 2254-2739 bp Feature: domain Description: COG3547 Location: 2272-2725 bp Feature: domain Description: COG3 547 Location: 2272-2725 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)