myRT

myRT report for GCA_900485625.1_18787_5_23

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Seq: UDSW01000164.1 Shigella flexneri strain 4028STDY6275032 genome assembly, contig: ERS1017640SCcontig000164, whole genome shotgun sequence (5836 bp)
Overview 1 RT 1: 520-3655 bp Neighborhood of RT #1 [520, 3655] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 520-1269 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1249 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1 249 bp Feature: gene Location: 1665-1865 bp Feature: domain Description: Tra5 Location: 1674-1848 bp Feature: domain Description: Tra5 Location: 1 674-1 848 bp Feature: gene Location: 1878-2681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 78-2673 bp Feature: gene Location: 2734-3060 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: gene Location: 3413-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDSW01000094.1 Shigella flexneri strain 4028STDY6275032 genome assembly, contig: ERS1017640SCcontig000094, whole genome shotgun sequence (14481 bp)
Overview 1 RT 1: 3140-6702 bp Neighborhood of RT #1 [3140, 6702] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3140-3268 bp Feature: gene Location: 3358-3597 bp Feature: domain Description: PHA02517 Location: 3361-3532 bp Feature: domain Description: PHA02 517 Location: 3361-3532 bp Feature: gene Location: 4189-5712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4462-5194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4462 -5194 bp Feature: domain Description: GIIM Note: maturase Location: 5269-5467 bp Feature: domain Description: GIIM Note: maturase Location: 52 69-5467 bp Feature: gene Location: 5847-6275 bp Feature: domain Description: PHA02517 Location: 5850-6273 bp Feature: domain Description: PHA02 517 Location: 5850-62 73 bp Feature: gene Location: 6547-6702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDSW01000085.1 Shigella flexneri strain 4028STDY6275032 genome assembly, contig: ERS1017640SCcontig000085, whole genome shotgun sequence (17017 bp)
Overview 1 RT 1: 14262-16915 bp Neighborhood of RT #1 [14262, 16915] COG3547 RVT-GII GIIM Feature: gene Location: 14262-14747 bp Feature: domain Description: COG3547 Location: 14280-14733 bp Feature: domain Description: COG3 547 Location: 14280-1473 3 bp Feature: gene Location: 14843-15010 bp Feature: gene Location: 15036-16253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: gene Location: 16264-16647 bp Feature: gene Location: 16721-16915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)