myRT

myRT report for GCA_900485635.1_18787_5_55

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Seq: UDSZ01000028.1 Shigella flexneri strain 4028STDY6275064 genome assembly, contig: ERS1017691SCcontig000028, whole genome shotgun sequence (46042 bp)
Overview 1 RT 1: 3-3802 bp Neighborhood of RT #1 [3, 3822] RVT-GII GIIM COG3547 sopB_N HTH_24 ParB Feature: gene Location: 3-269 bp Feature: gene Location: 748-1965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1 588 bp Feature: domain Description: GIIM Note: maturase Location: 1666-1888 bp Feature: domain Description: GIIM Note: maturase Location: 1 666-1 888 bp Feature: gene Location: 2254-2739 bp Feature: domain Description: COG3547 Location: 2272-2725 bp Feature: domain Description: COG3547 Location: 2272-2725 bp Feature: gene Location: 2995-3822 bp Feature: domain Description: sopB_N Location: 3019-3214 bp Feature: domain Description: sopB_N Location: 301 9-321 4 bp Feature: domain Description: HTH_24 Location: 3316-3391 bp Feature: domain Description: HTH_24 Location: 331 6-3391 bp Feature: domain Description: ParB Location: 3427-3802 bp Feature: domain Description: ParB Location: 3427-3802 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), sopB_N (cd16394), HTH_24 (pfam13412), ParB (smart00470)

Seq: UDSZ01000005.1 Shigella flexneri strain 4028STDY6275064 genome assembly, contig: ERS1017691SCcontig000005, whole genome shotgun sequence (87551 bp)
Overview 1 RT 1: 8208-9902 bp Neighborhood of RT #1 [8208, 9902] PHA02517 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 8208-8414 bp Feature: domain Description: PHA02517 Location: 8211-8412 bp Feature: domain Description: PHA02 517 Location: 82 11-8412 bp Feature: gene Location: 8470-8655 bp Feature: domain Description: PHA02517 Location: 8473-8641 bp Feature: domain Description: PHA02 517 Location: 8473-8641 bp Feature: gene Location: 8772-9467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8778-8949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8778-8949 bp Feature: domain Description: GIIM Note: maturase Location: 9024-9243 bp Feature: domain Description: GIIM Note: maturase Location: 902 4-92 43 bp Feature: gene Location: 9442-9924 bp Feature: domain Description: PHA02517 Location: 9502-9871 bp Feature: domain Description: PHA02 517 Location: 9502 -9871 bp Feature: gene Location: 9774-9902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDSZ01000136.1 Shigella flexneri strain 4028STDY6275064 genome assembly, contig: ERS1017691SCcontig000136, whole genome shotgun sequence (8552 bp)
Overview 1 RT 1: 964-8237 bp Neighborhood of RT #1 [964, 8237] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 964-5082 bp Feature: domain Description: ESPR Location: 967-1036 bp Feature: domain Description: ESPR Location: 967-103 6 bp Feature: domain Description: Peptidase_S6 Location: 1117-3289 bp Feature: domain Description: Peptidase_S6 Location: 1117-3 289 bp Feature: domain Description: autotrans_barl Location: 3853-5080 bp Feature: domain Description: autotrans_barl Location: 3 853 -5080 bp Feature: gene Location: 5247-5633 bp Feature: domain Description: PHA02517 Location: 5250-5631 bp Feature: domain Description: PHA02517 Location: 5250-563 1 bp Feature: gene Location: 5810-7333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083-6815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6083 -6815 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: domain Description: GIIM Note: maturase Location: 6890-7088 bp Feature: gene Location: 7627-7995 bp Feature: gene Location: 8070-8237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDSZ01000159.1 Shigella flexneri strain 4028STDY6275064 genome assembly, contig: ERS1017691SCcontig000159, whole genome shotgun sequence (6231 bp)
Overview 1 RT 1: 2542-5243 bp Neighborhood of RT #1 [2542, 5263] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2542-2697 bp Feature: gene Location: 2723-3094 bp Feature: domain Description: GIIM Note: maturase Location: 2801-3020 bp Feature: domain Description: GIIM Note: maturase Location: 2801-3020 bp Feature: gene Location: 3102-3905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3402-3897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34 02-3897 bp Feature: gene Location: 3918-4118 bp Feature: domain Description: Tra5 Location: 3927-4101 bp Feature: domain Description: Tra5 Location: 3927-4 101 bp Feature: gene Location: 4514-5263 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4589-5243 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4 589-524 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)