myRT

myRT report for GCA_900485645.1_18787_4_8

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Seq: UDSV01000236.1 Shigella flexneri strain 4028STDY6274921 genome assembly, contig: ERS1017550SCcontig000236, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: UDSV01000028.1 Shigella flexneri strain 4028STDY6274921 genome assembly, contig: ERS1017550SCcontig000028, whole genome shotgun sequence (43047 bp)
Overview 1 RT 1: 39209-43046 bp Neighborhood of RT #1 [39209, 43046] sopB_N HTH_24 ParB COG3547 RVT-GII GIIM Feature: gene Location: 39209-40036 bp Feature: domain Description: sopB_N Location: 39233-39428 bp Feature: domain Description: sopB_N Location: 392 33-3942 8 bp Feature: domain Description: HTH_24 Location: 39530-39605 bp Feature: domain Description: HTH_2 4 Location: 39530-39605 bp Feature: domain Description: ParB Location: 39641-40016 bp Feature: domain Description: ParB Location: 39641-40016 bp Feature: gene Location: 40292-40777 bp Feature: domain Description: COG3547 Location: 40310-40763 bp Feature: domain Description: COG3547 Location: 40310-40763 bp Feature: gene Location: 41066-42283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41252-41906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 412 52 -41906 bp Feature: domain Description: GIIM Note: maturase Location: 41984-42206 bp Feature: domain Description: GIIM Note: maturase Location: 41984-42 2 06 bp Feature: gene Location: 42762-43046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sopB_N (cd16394), HTH_24 (pfam13412), ParB (smart00470), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDSV01000169.1 Shigella flexneri strain 4028STDY6274921 genome assembly, contig: ERS1017550SCcontig000169, whole genome shotgun sequence (5635 bp)
Overview 1 RT 1: 319-3454 bp Neighborhood of RT #1 [319, 3454] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 319-1068 bp Feature: domain Description: PAP2_acid_phosphatase Location: 394-1048 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3 94-1048 bp Feature: gene Location: 1464-1664 bp Feature: domain Description: Tra5 Location: 1473-1647 bp Feature: domain Description: Tra5 Location: 1473 -1647 bp Feature: gene Location: 1677-2480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1977-2472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1977-2472 bp Feature: gene Location: 2533-2859 bp Feature: domain Description: GIIM Note: maturase Location: 2566-2785 bp Feature: domain Description: GIIM Note: maturase Location: 2566-2785 bp Feature: gene Location: 3212-3454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)