myRT

myRT report for GCA_900485655.1_18787_5_52

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Seq: UIOW01000160.1 Shigella flexneri strain 4028STDY6275061 genome assembly, contig: ERS1017688SCcontig000160, whole genome shotgun sequence (6253 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 042-1 696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 21 21 -2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-31 20 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 321 4-3433 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UIOW01000140.1 Shigella flexneri strain 4028STDY6275061 genome assembly, contig: ERS1017688SCcontig000140, whole genome shotgun sequence (8548 bp)
Overview 1 RT 1: 2-7587 bp Neighborhood of RT #1 [2, 7589] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 2-175 bp Feature: domain Description: InsE Location: 5-164 bp Feature: domain Description: InsE Location: 5-164 bp Feature: gene Location: 202-603 bp Feature: domain Description: PHA02517 Location: 226-568 bp Feature: domain Description: PHA02 517 Location: 2 2 6-568 bp Feature: gene Location: 1220-2743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493-2225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493-2 2 2 5 bp Feature: domain Description: GIIM Note: maturase Location: 2300-2498 bp Feature: domain Description: GIIM Note: maturase Location: 2 300-2 498 bp Feature: gene Location: 2920-3306 bp Feature: domain Description: PHA02517 Location: 2923-3304 bp Feature: domain Description: PHA02 517 Location: 2 92 3-3304 bp Feature: gene Location: 3471-7589 bp Feature: domain Description: ESPR Location: 3474-3543 bp Feature: domain Description: ESPR Location: 3474-3543 bp Feature: domain Description: Peptidase_S6 Location: 3624-5796 bp Feature: domain Description: Peptidase_S6 Location: 362 4-5796 bp Feature: domain Description: autotrans_barl Location: 6360-7587 bp Feature: domain Description: autotrans_barl Location: 6360-7587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIOW01000144.1 Shigella flexneri strain 4028STDY6275061 genome assembly, contig: ERS1017688SCcontig000144, whole genome shotgun sequence (8162 bp)
Overview 1 RT 1: 5407-8060 bp Neighborhood of RT #1 [5407, 8060] COG3547 RVT-GII GIIM Feature: gene Location: 5407-5892 bp Feature: domain Description: COG3547 Location: 5425-5878 bp Feature: domain Description: COG3 547 Location: 5425-5878 bp Feature: gene Location: 5988-6155 bp Feature: gene Location: 6181-7398 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6367-7021 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63 67-7021 bp Feature: domain Description: GIIM Note: maturase Location: 7099-7321 bp Feature: domain Description: GIIM Note: maturase Location: 7099-73 21 bp Feature: gene Location: 7409-7792 bp Feature: gene Location: 7866-8060 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)