myRT

myRT report for GCA_900485675.1_18787_4_34

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Seq: UDUG01000023.1 Shigella flexneri strain 4028STDY6274947 genome assembly, contig: ERS1017576SCcontig000023, whole genome shotgun sequence (52732 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA0251 7 Location: 2360-2741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 291 1 -2980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3061 -5233 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)

Seq: UDUG01000176.1 Shigella flexneri strain 4028STDY6274947 genome assembly, contig: ERS1017576SCcontig000176, whole genome shotgun sequence (4883 bp)
Overview 1 RT 1: 134-2699 bp Neighborhood of RT #1 [134, 2699] Tra5 RVT-GII GIIM Feature: gene Location: 134-313 bp Feature: gene Location: 709-909 bp Feature: domain Description: Tra5 Location: 718-892 bp Feature: domain Description: Tra5 Location: 718-892 bp Feature: gene Location: 922-1725 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1222-1717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 2 2 -1717 bp Feature: gene Location: 1778-2104 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2030 bp Feature: domain Description: GIIM Note: maturase Location: 1811-2 030 bp Feature: gene Location: 2457-2699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), Tra5 (COG2801), RVT-GII

Seq: UDUG01000152.1 Shigella flexneri strain 4028STDY6274947 genome assembly, contig: ERS1017576SCcontig000152, whole genome shotgun sequence (6886 bp)
Overview 1 RT 1: 4236-6857 bp Neighborhood of RT #1 [4236, 6883] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4236-4721 bp Feature: domain Description: COG3547 Location: 4254-4707 bp Feature: domain Description: COG3 547 Location: 4254-4707 bp Feature: gene Location: 4817-4984 bp Feature: gene Location: 5010-6227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5196-5850 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5196-5850 bp Feature: domain Description: GIIM Note: maturase Location: 5928-6150 bp Feature: domain Description: GIIM Note: maturase Location: 5928-6150 bp Feature: gene Location: 6238-6621 bp Feature: gene Location: 6704-6883 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6707-6857 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6707-6857 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)