myRT

myRT report for GCA_900485695.1_18787_5_77

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Seq: UDTF01000022.1 Shigella flexneri strain 4028STDY6275088 genome assembly, contig: ERS1017715SCcontig000022, whole genome shotgun sequence (52425 bp)
Overview 1 RT 1: 49318-52422 bp Neighborhood of RT #1 [49318, 52422] PHA02517 RVT-GII GIIM Feature: gene Location: 49318-49632 bp Feature: gene Location: 49683-50129 bp Feature: domain Description: PHA02517 Location: 49686-50127 bp Feature: domain Description: PHA0251 7 Location: 49686-501 27 bp Feature: gene Location: 50246-51769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50519-51251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5051 9-51 251 bp Feature: domain Description: GIIM Note: maturase Location: 51326-51524 bp Feature: domain Description: GIIM Note: maturase Location: 51 326-51 524 bp Feature: gene Location: 52063-52422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDTF01000168.1 Shigella flexneri strain 4028STDY6275088 genome assembly, contig: ERS1017715SCcontig000168, whole genome shotgun sequence (5896 bp)
Overview 1 RT 1: 517-3652 bp Neighborhood of RT #1 [517, 3652] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 517-1266 bp Feature: domain Description: PAP2_acid_phosphatase Location: 592-1246 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 592 -12 46 bp Feature: gene Location: 1662-1862 bp Feature: domain Description: Tra5 Location: 1671-1845 bp Feature: domain Description: Tra5 Location: 1671-1845 bp Feature: gene Location: 1875-2678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2175-2670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 175-2 670 bp Feature: gene Location: 2731-3057 bp Feature: domain Description: GIIM Note: maturase Location: 2764-2983 bp Feature: domain Description: GIIM Note: maturase Location: 2 764-2 983 bp Feature: gene Location: 3410-3652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDTF01000169.1 Shigella flexneri strain 4028STDY6275088 genome assembly, contig: ERS1017715SCcontig000169, whole genome shotgun sequence (5855 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3 547 Location: 2184-263 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)