myRT

myRT report for GCA_900485705.1_18787_5_34

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Seq: UDSX01000198.1 Shigella flexneri strain 4028STDY6275043 genome assembly, contig: ERS1017662SCcontig000198, whole genome shotgun sequence (3834 bp)
Overview 1 RT 1: 1-3250 bp Neighborhood of RT #1 [1, 3252] RVT-GII GIIM PHA02517 PHA02517 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Feature: gene Location: 2366-2722 bp Feature: domain Description: PHA02517 Location: 2429-2576 bp Feature: domain Description: PHA0251 7 Location: 2429-2576 bp Feature: gene Location: 2605-3252 bp Feature: domain Description: PHA02517 Location: 2608-3250 bp Feature: domain Description: PHA0251 7 Location: 2608-3250 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDSX01000176.1 Shigella flexneri strain 4028STDY6275043 genome assembly, contig: ERS1017662SCcontig000176, whole genome shotgun sequence (5608 bp)
Overview 1 RT 1: 323-3458 bp Neighborhood of RT #1 [323, 3458] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 323-1072 bp Feature: domain Description: PAP2_acid_phosphatase Location: 398-1052 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 398-1052 bp Feature: gene Location: 1468-1668 bp Feature: domain Description: Tra5 Location: 1477-1651 bp Feature: domain Description: Tra5 Location: 1477-1651 bp Feature: gene Location: 1681-2484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1981-2476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1981-2 476 bp Feature: gene Location: 2537-2863 bp Feature: domain Description: GIIM Note: maturase Location: 2570-2789 bp Feature: domain Description: GIIM Note: maturase Location: 2 570-2 789 bp Feature: gene Location: 3216-3458 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDSX01000167.1 Shigella flexneri strain 4028STDY6275043 genome assembly, contig: ERS1017662SCcontig000167, whole genome shotgun sequence (5846 bp)
Overview 1 RT 1: 3196-5817 bp Neighborhood of RT #1 [3196, 5843] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3196-3681 bp Feature: domain Description: COG3547 Location: 3214-3667 bp Feature: domain Description: COG3 547 Location: 3 214-3 667 bp Feature: gene Location: 3777-3944 bp Feature: gene Location: 3970-5187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4156-4810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4156-4810 bp Feature: domain Description: GIIM Note: maturase Location: 4888-5110 bp Feature: domain Description: GIIM Note: maturase Location: 4888-5110 bp Feature: gene Location: 5198-5581 bp Feature: gene Location: 5664-5843 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5667-5817 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5667-5817 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)