myRT

myRT report for GCA_900485715.1_18787_5_54

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Seq: UDTA01000087.1 Shigella flexneri strain 4028STDY6275063 genome assembly, contig: ERS1017690SCcontig000087, whole genome shotgun sequence (17845 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-1 57 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1 500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1 578-1 800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-21 1 6 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 21 84-2637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDTA01000118.1 Shigella flexneri strain 4028STDY6275063 genome assembly, contig: ERS1017690SCcontig000118, whole genome shotgun sequence (10955 bp)
Overview 1 RT 1: 1-3170 bp Neighborhood of RT #1 [1, 3170] RVT-GII GIIM PHA02517 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02 517 Location: 2 360-2 741 bp Feature: gene Location: 3015-3170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDTA01000170.1 Shigella flexneri strain 4028STDY6275063 genome assembly, contig: ERS1017690SCcontig000170, whole genome shotgun sequence (5827 bp)
Overview 1 RT 1: 532-3667 bp Neighborhood of RT #1 [532, 3667] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 532-1281 bp Feature: domain Description: PAP2_acid_phosphatase Location: 607-1261 bp Feature: domain Description: PAP2_acid_phosphatase Location: 607-1261 bp Feature: gene Location: 1677-1877 bp Feature: domain Description: Tra5 Location: 1686-1860 bp Feature: domain Description: Tra5 Location: 1686-1860 bp Feature: gene Location: 1890-2693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190-2685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2190-2685 bp Feature: gene Location: 2746-3072 bp Feature: domain Description: GIIM Note: maturase Location: 2779-2998 bp Feature: domain Description: GIIM Note: maturase Location: 2779-2998 bp Feature: gene Location: 3425-3667 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)