myRT

myRT report for GCA_900485725.1_18787_5_45

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Seq: UDTB01000143.1 Shigella flexneri strain 4028STDY6275054 genome assembly, contig: ERS1017681SCcontig000143, whole genome shotgun sequence (8579 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 69-262 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951 -1 605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1 683-1 905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 1 0-2221 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDTB01000127.1 Shigella flexneri strain 4028STDY6275054 genome assembly, contig: ERS1017681SCcontig000127, whole genome shotgun sequence (9793 bp)
Overview 1 RT 1: 573-4410 bp Neighborhood of RT #1 [573, 4475] PHA02517 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 573-1220 bp Feature: domain Description: PHA02517 Location: 576-1218 bp Feature: domain Description: PHA02 517 Location: 576-12 18 bp Feature: gene Location: 1456-1818 bp Feature: domain Description: PHA02517 Location: 1459-1786 bp Feature: domain Description: PHA02 517 Location: 1459-1786 bp Feature: gene Location: 1935-3458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2208-2940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 2 08-2 940 bp Feature: domain Description: GIIM Note: maturase Location: 3015-3213 bp Feature: domain Description: GIIM Note: maturase Location: 3015-32 13 bp Feature: gene Location: 3412-3837 bp Feature: gene Location: 4050-4475 bp Feature: domain Description: PHA02517 Location: 4074-4410 bp Feature: domain Description: PHA02 517 Location: 4074-4410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDTB01000179.1 Shigella flexneri strain 4028STDY6275054 genome assembly, contig: ERS1017681SCcontig000179, whole genome shotgun sequence (5624 bp)
Overview 1 RT 1: 2588-5289 bp Neighborhood of RT #1 [2588, 5309] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2588-2743 bp Feature: gene Location: 2769-3140 bp Feature: domain Description: GIIM Note: maturase Location: 2847-3066 bp Feature: domain Description: GIIM Note: maturase Location: 2847-3 066 bp Feature: gene Location: 3148-3951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3448-3943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 448-3 943 bp Feature: gene Location: 3964-4164 bp Feature: domain Description: Tra5 Location: 3973-4147 bp Feature: domain Description: Tra5 Location: 3 973 -4147 bp Feature: gene Location: 4560-5309 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4635-5289 bp Feature: domain Description: PAP2_acid_phosphatase Location: 463 5-5289 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)