myRT

myRT report for GCA_900485735.1_18787_5_76

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Seq: UDTJ01000086.1 Shigella flexneri strain 4028STDY6275087 genome assembly, contig: ERS1017714SCcontig000086, whole genome shotgun sequence (16877 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-1 57 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1 500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1 578-1 800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-21 1 6 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3547 Location: 21 84-2637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDTJ01000142.1 Shigella flexneri strain 4028STDY6275087 genome assembly, contig: ERS1017714SCcontig000142, whole genome shotgun sequence (8567 bp)
Overview 1 RT 1: 979-8252 bp Neighborhood of RT #1 [979, 8252] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 979-5097 bp Feature: domain Description: ESPR Location: 982-1051 bp Feature: domain Description: ESPR Location: 982 -1051 bp Feature: domain Description: Peptidase_S6 Location: 1132-3304 bp Feature: domain Description: Peptidase_S6 Location: 1132 -3304 bp Feature: domain Description: autotrans_barl Location: 3868-5095 bp Feature: domain Description: autotrans_barl Location: 3868-5095 bp Feature: gene Location: 5262-5648 bp Feature: domain Description: PHA02517 Location: 5265-5646 bp Feature: domain Description: PHA02 517 Location: 52 65-5646 bp Feature: gene Location: 5825-7348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6098-6830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6098-6830 bp Feature: domain Description: GIIM Note: maturase Location: 6905-7103 bp Feature: domain Description: GIIM Note: maturase Location: 6905-7103 bp Feature: gene Location: 7642-8010 bp Feature: gene Location: 8085-8252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDTJ01000165.1 Shigella flexneri strain 4028STDY6275087 genome assembly, contig: ERS1017714SCcontig000165, whole genome shotgun sequence (6248 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3 120 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 3 214-3 43 3 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)