myRT

myRT report for GCA_900485755.1_18787_4_57

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Seq: UDTE01000170.1 Shigella flexneri strain 4028STDY6274970 genome assembly, contig: ERS1017603SCcontig000170, whole genome shotgun sequence (5631 bp)
Overview 1 RT 1: 2594-5295 bp Neighborhood of RT #1 [2594, 5315] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2594-2749 bp Feature: gene Location: 2775-3146 bp Feature: domain Description: GIIM Note: maturase Location: 2853-3072 bp Feature: domain Description: GIIM Note: maturase Location: 2853-3072 bp Feature: gene Location: 3154-3957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3454-3949 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3454-3949 bp Feature: gene Location: 3970-4170 bp Feature: domain Description: Tra5 Location: 3979-4153 bp Feature: domain Description: Tra5 Location: 3979-41 53 bp Feature: gene Location: 4566-5315 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4641-5295 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4641 -5295 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDTE01000037.1 Shigella flexneri strain 4028STDY6274970 genome assembly, contig: ERS1017603SCcontig000037, whole genome shotgun sequence (37573 bp)
Overview 1 RT 1: 1601-9017 bp Neighborhood of RT #1 [1601, 9019] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1601-1729 bp Feature: gene Location: 1819-2058 bp Feature: domain Description: PHA02517 Location: 1822-1993 bp Feature: domain Description: PHA02 517 Location: 182 2 -1993 bp Feature: gene Location: 2650-4173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2923-3655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 3-3655 bp Feature: domain Description: GIIM Note: maturase Location: 3730-3928 bp Feature: domain Description: GIIM Note: maturase Location: 3730-392 8 bp Feature: gene Location: 4350-4736 bp Feature: domain Description: PHA02517 Location: 4353-4734 bp Feature: domain Description: PHA02 517 Location: 4353-4734 bp Feature: gene Location: 4901-9019 bp Feature: domain Description: ESPR Location: 4904-4973 bp Feature: domain Description: ESPR Location: 4904-4973 bp Feature: domain Description: Peptidase_S6 Location: 5054-7226 bp Feature: domain Description: Peptidase_S6 Location: 5054-72 2 6 bp Feature: domain Description: autotrans_barl Location: 7790-9017 bp Feature: domain Description: autotrans_barl Location: 7790-9017 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDTE01000164.1 Shigella flexneri strain 4028STDY6274970 genome assembly, contig: ERS1017603SCcontig000164, whole genome shotgun sequence (5970 bp)
Overview 1 RT 1: 3215-5868 bp Neighborhood of RT #1 [3215, 5868] COG3547 RVT-GII GIIM Feature: gene Location: 3215-3700 bp Feature: domain Description: COG3547 Location: 3233-3686 bp Feature: domain Description: COG3 547 Location: 3 23 3 -3 686 bp Feature: gene Location: 3796-3963 bp Feature: gene Location: 3989-5206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-4829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4175-4829 bp Feature: domain Description: GIIM Note: maturase Location: 4907-5129 bp Feature: domain Description: GIIM Note: maturase Location: 4907-5129 bp Feature: gene Location: 5217-5600 bp Feature: gene Location: 5674-5868 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)