myRT

myRT report for GCA_900485765.1_18787_5_75

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Seq: UDTI01000104.1 Shigella flexneri strain 4028STDY6275086 genome assembly, contig: ERS1017713SCcontig000104, whole genome shotgun sequence (12431 bp)
Overview 1 RT 1: 983-4118 bp Neighborhood of RT #1 [983, 4118] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 983-1732 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1058-1712 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 058-1 71 2 bp Feature: gene Location: 2128-2328 bp Feature: domain Description: Tra5 Location: 2137-2311 bp Feature: domain Description: Tra5 Location: 21 37-231 1 bp Feature: gene Location: 2341-3144 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2641-3136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2641 -31 36 bp Feature: gene Location: 3197-3523 bp Feature: domain Description: GIIM Note: maturase Location: 3230-3449 bp Feature: domain Description: GIIM Note: maturase Location: 3230-3449 bp Feature: gene Location: 3876-4118 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDTI01000144.1 Shigella flexneri strain 4028STDY6275086 genome assembly, contig: ERS1017713SCcontig000144, whole genome shotgun sequence (8564 bp)
Overview 1 RT 1: 2-7587 bp Neighborhood of RT #1 [2, 7589] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 2-175 bp Feature: domain Description: InsE Location: 5-164 bp Feature: domain Description: InsE Location: 5-164 bp Feature: gene Location: 202-603 bp Feature: domain Description: PHA02517 Location: 226-568 bp Feature: domain Description: PHA02 517 Location: 2 2 6-568 bp Feature: gene Location: 1220-2743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493-2225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493-2 2 2 5 bp Feature: domain Description: GIIM Note: maturase Location: 2300-2498 bp Feature: domain Description: GIIM Note: maturase Location: 2 300-2 498 bp Feature: gene Location: 2920-3306 bp Feature: domain Description: PHA02517 Location: 2923-3304 bp Feature: domain Description: PHA02 517 Location: 2 92 3-3304 bp Feature: gene Location: 3471-7589 bp Feature: domain Description: ESPR Location: 3474-3543 bp Feature: domain Description: ESPR Location: 3474-3543 bp Feature: domain Description: Peptidase_S6 Location: 3624-5796 bp Feature: domain Description: Peptidase_S6 Location: 362 4-5796 bp Feature: domain Description: autotrans_barl Location: 6360-7587 bp Feature: domain Description: autotrans_barl Location: 6360-7587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDTI01000030.1 Shigella flexneri strain 4028STDY6275086 genome assembly, contig: ERS1017713SCcontig000030, whole genome shotgun sequence (44222 bp)
Overview 1 RT 1: 1-3714 bp Neighborhood of RT #1 [1, 3734] DDE_Tnp_IS66 RVT-GII GIIM COG3547 sopB_N HTH_24 ParB Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 828-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3 547 Location: 2184-263 7 bp Feature: gene Location: 2907-3734 bp Feature: domain Description: sopB_N Location: 2931-3126 bp Feature: domain Description: sopB_N Location: 293 1-3 126 bp Feature: domain Description: HTH_24 Location: 3228-3303 bp Feature: domain Description: HTH_24 Location: 3 228-3 3 03 bp Feature: domain Description: ParB Location: 3339-3714 bp Feature: domain Description: ParB Location: 3 3 3 9-3 714 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase ), sopB_N (cd16394), HTH_24 (pfam13412), ParB (smart00470), RVT-GII, GIIM (pfam08388)