myRT

myRT report for GCA_900485775.1_18787_5_71

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Seq: UDTC01000170.1 Shigella flexneri strain 4028STDY6275080 genome assembly, contig: ERS1017707SCcontig000170, whole genome shotgun sequence (5838 bp)
Overview 1 RT 1: 2595-5296 bp Neighborhood of RT #1 [2595, 5316] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2595-2750 bp Feature: gene Location: 2776-3147 bp Feature: domain Description: GIIM Note: maturase Location: 2854-3073 bp Feature: domain Description: GIIM Note: maturase Location: 2854-3073 bp Feature: gene Location: 3155-3958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3455-3950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3455-3950 bp Feature: gene Location: 3971-4171 bp Feature: domain Description: Tra5 Location: 3980-4154 bp Feature: domain Description: Tra5 Location: 3980-41 54 bp Feature: gene Location: 4567-5316 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4642-5296 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4642-5296 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDTC01000168.1 Shigella flexneri strain 4028STDY6275080 genome assembly, contig: ERS1017707SCcontig000168, whole genome shotgun sequence (5858 bp)
Overview 1 RT 1: 3208-5829 bp Neighborhood of RT #1 [3208, 5855] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3208-3693 bp Feature: domain Description: COG3547 Location: 3226-3679 bp Feature: domain Description: COG3547 Location: 32 2 6-3679 bp Feature: gene Location: 3789-3956 bp Feature: gene Location: 3982-5199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4168-4822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4168-482 2 bp Feature: domain Description: GIIM Note: maturase Location: 4900-5122 bp Feature: domain Description: GIIM Note: maturase Location: 4900-512 2 bp Feature: gene Location: 5210-5593 bp Feature: gene Location: 5676-5855 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5679-5829 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5679-582 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDTC01000204.1 Shigella flexneri strain 4028STDY6275080 genome assembly, contig: ERS1017707SCcontig000204, whole genome shotgun sequence (3597 bp)
Overview 1 RT 1: 1-3213 bp Neighborhood of RT #1 [1, 3248] RVT-GII GIIM PHA02517 DDE_Tnp_ISL3 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2338-3018 bp Feature: domain Description: PHA02517 Location: 2377-3016 bp Feature: domain Description: PHA02517 Location: 23 77-3 016 bp Feature: gene Location: 3021-3248 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3072-3213 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3 072-3 213 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388)