myRT

myRT report for GCA_900485785.1_18787_5_74

Download annotations/find similar RTs

Seq: UIPD01000168.1 Shigella flexneri strain 4028STDY6275085 genome assembly, contig: ERS1017712SCcontig000168, whole genome shotgun sequence (5862 bp)
Overview 1 RT 1: 3212-5833 bp Neighborhood of RT #1 [3212, 5859] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3212-3697 bp Feature: domain Description: COG3547 Location: 3230-3683 bp Feature: domain Description: COG3547 Location: 3230-3683 bp Feature: gene Location: 3793-3960 bp Feature: gene Location: 3986-5203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4172-4826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 72-4826 bp Feature: domain Description: GIIM Note: maturase Location: 4904-5126 bp Feature: domain Description: GIIM Note: maturase Location: 4904-51 26 bp Feature: gene Location: 5214-5597 bp Feature: gene Location: 5680-5859 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683-5833 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5683-5833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UIPD01000144.1 Shigella flexneri strain 4028STDY6275085 genome assembly, contig: ERS1017712SCcontig000144, whole genome shotgun sequence (8001 bp)
Overview 1 RT 1: 976-7998 bp Neighborhood of RT #1 [976, 7998] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 976-5094 bp Feature: domain Description: ESPR Location: 979-1048 bp Feature: domain Description: ESPR Location: 979-1048 bp Feature: domain Description: Peptidase_S6 Location: 1129-3301 bp Feature: domain Description: Peptidase_S6 Location: 112 9-3301 bp Feature: domain Description: autotrans_barl Location: 3865-5092 bp Feature: domain Description: autotrans_barl Location: 3865-5092 bp Feature: gene Location: 5259-5645 bp Feature: domain Description: PHA02517 Location: 5262-5643 bp Feature: domain Description: PHA02 517 Location: 52 62 -5643 bp Feature: gene Location: 5822-7345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6095-6827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6095-682 7 bp Feature: domain Description: GIIM Note: maturase Location: 6902-7100 bp Feature: domain Description: GIIM Note: maturase Location: 6902 -7100 bp Feature: gene Location: 7639-7998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIPD01000157.1 Shigella flexneri strain 4028STDY6275085 genome assembly, contig: ERS1017712SCcontig000157, whole genome shotgun sequence (6519 bp)
Overview 1 RT 1: 1140-4218 bp Neighborhood of RT #1 [1140, 4218] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1140-1889 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1215-1869 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1215-1869 bp Feature: gene Location: 2285-2485 bp Feature: domain Description: Tra5 Location: 2294-2468 bp Feature: domain Description: Tra5 Location: 2294-2468 bp Feature: gene Location: 2498-3301 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2798-3293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2798-3 293 bp Feature: gene Location: 3354-3680 bp Feature: domain Description: GIIM Note: maturase Location: 3387-3606 bp Feature: domain Description: GIIM Note: maturase Location: 3 3 87-3 606 bp Feature: gene Location: 4033-4218 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)