myRT

myRT report for GCA_900485815.1_18787_5_65

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Seq: UDTS01000109.1 Shigella flexneri strain 4028STDY6275074 genome assembly, contig: ERS1017701SCcontig000109, whole genome shotgun sequence (11648 bp)
Overview 1 RT 1: 8998-11619 bp Neighborhood of RT #1 [8998, 11645] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 8998-9483 bp Feature: domain Description: COG3547 Location: 9016-9469 bp Feature: domain Description: COG3547 Location: 901 6-9469 bp Feature: gene Location: 9579-9746 bp Feature: gene Location: 9772-10989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9958-10612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9958-1 061 2 bp Feature: domain Description: GIIM Note: maturase Location: 10690-10912 bp Feature: domain Description: GIIM Note: maturase Location: 1 0690-1 091 2 bp Feature: gene Location: 11000-11383 bp Feature: gene Location: 11466-11645 bp Feature: domain Description: DDE_Tnp_IS66 Location: 11469-11619 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 1 469-1 1 61 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDTS01000165.1 Shigella flexneri strain 4028STDY6275074 genome assembly, contig: ERS1017701SCcontig000165, whole genome shotgun sequence (6286 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 1042 -1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2 12 1-2 2 95 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 62 5-312 0 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 32 14-3433 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDTS01000144.1 Shigella flexneri strain 4028STDY6275074 genome assembly, contig: ERS1017701SCcontig000144, whole genome shotgun sequence (8561 bp)
Overview 1 RT 1: 973-8246 bp Neighborhood of RT #1 [973, 8246] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 973-5091 bp Feature: domain Description: ESPR Location: 976-1045 bp Feature: domain Description: ESPR Location: 976-1045 bp Feature: domain Description: Peptidase_S6 Location: 1126-3298 bp Feature: domain Description: Peptidase_S6 Location: 1126-3 298 bp Feature: domain Description: autotrans_barl Location: 3862-5089 bp Feature: domain Description: autotrans_barl Location: 3 862-5089 bp Feature: gene Location: 5256-5642 bp Feature: domain Description: PHA02517 Location: 5259-5640 bp Feature: domain Description: PHA02517 Location: 5259-5640 bp Feature: gene Location: 5819-7342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6092-6824 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6092-6824 bp Feature: domain Description: GIIM Note: maturase Location: 6899-7097 bp Feature: domain Description: GIIM Note: maturase Location: 6899-7097 bp Feature: gene Location: 7636-8004 bp Feature: gene Location: 8079-8246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)