myRT

myRT report for GCA_900485825.1_18787_5_51

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Seq: UDTL01000070.1 Shigella flexneri strain 4028STDY6275060 genome assembly, contig: ERS1017687SCcontig000070, whole genome shotgun sequence (21197 bp)
Overview 1 RT 1: 1608-9024 bp Neighborhood of RT #1 [1608, 9026] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1608-1736 bp Feature: gene Location: 1826-2065 bp Feature: domain Description: PHA02517 Location: 1829-2000 bp Feature: domain Description: PHA0251 7 Location: 1 829-2000 bp Feature: gene Location: 2657-4180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930-3662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2930-3662 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: domain Description: GIIM Note: maturase Location: 3737-3935 bp Feature: gene Location: 4357-4743 bp Feature: domain Description: PHA02517 Location: 4360-4741 bp Feature: domain Description: PHA0251 7 Location: 4360-4741 bp Feature: gene Location: 4908-9026 bp Feature: domain Description: ESPR Location: 4911-4980 bp Feature: domain Description: ESPR Location: 491 1 -4980 bp Feature: domain Description: Peptidase_S6 Location: 5061-7233 bp Feature: domain Description: Peptidase_S6 Location: 5061 -7233 bp Feature: domain Description: autotrans_barl Location: 7797-9024 bp Feature: domain Description: autotrans_barl Location: 7797-9024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDTL01000171.1 Shigella flexneri strain 4028STDY6275060 genome assembly, contig: ERS1017687SCcontig000171, whole genome shotgun sequence (5869 bp)
Overview 1 RT 1: 3219-5840 bp Neighborhood of RT #1 [3219, 5866] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3219-3704 bp Feature: domain Description: COG3547 Location: 3237-3690 bp Feature: domain Description: COG3547 Location: 32 37-3690 bp Feature: gene Location: 3800-3967 bp Feature: gene Location: 3993-5210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4179-4833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4179-4833 bp Feature: domain Description: GIIM Note: maturase Location: 4911-5133 bp Feature: domain Description: GIIM Note: maturase Location: 4911-5133 bp Feature: gene Location: 5221-5604 bp Feature: gene Location: 5687-5866 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5690-5840 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5690-5840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDTL01000142.1 Shigella flexneri strain 4028STDY6275060 genome assembly, contig: ERS1017687SCcontig000142, whole genome shotgun sequence (8159 bp)
Overview 1 RT 1: 2843-5978 bp Neighborhood of RT #1 [2843, 5978] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 2843-3592 bp Feature: domain Description: PAP2_acid_phosphatase Location: 2918-3572 bp Feature: domain Description: PAP2_acid_phosphatase Location: 2918-3 572 bp Feature: gene Location: 3988-4188 bp Feature: domain Description: Tra5 Location: 3997-4171 bp Feature: domain Description: Tra5 Location: 3 997-4171 bp Feature: gene Location: 4201-5004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4501-4996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4501-4996 bp Feature: gene Location: 5057-5383 bp Feature: domain Description: GIIM Note: maturase Location: 5090-5309 bp Feature: domain Description: GIIM Note: maturase Location: 5090-53 09 bp Feature: gene Location: 5736-5978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)