myRT

myRT report for GCA_900485835.1_18787_4_64

Download annotations/find similar RTs

Seq: UDTG01000012.1 Shigella flexneri strain 4028STDY6274977 genome assembly, contig: ERS1017617SCcontig000012, whole genome shotgun sequence (67083 bp)
Overview 1 RT 1: 13561-21340 bp Neighborhood of RT #1 [13561, 21342] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 13561-13887 bp Feature: domain Description: InsE Location: 13564-13885 bp Feature: domain Description: InsE Location: 1 3564-1 3885 bp Feature: gene Location: 13887-14366 bp Feature: domain Description: PHA02517 Location: 13947-14301 bp Feature: domain Description: PHA0251 7 Location: 1 3947-1 4301 bp Feature: gene Location: 14973-16496 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15246-15978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5246-1 5978 bp Feature: domain Description: GIIM Note: maturase Location: 16053-16251 bp Feature: domain Description: GIIM Note: maturase Location: 1 6053-1 6251 bp Feature: gene Location: 16673-17059 bp Feature: domain Description: PHA02517 Location: 16676-17057 bp Feature: domain Description: PHA0251 7 Location: 1 6676-1 7057 bp Feature: gene Location: 17224-21342 bp Feature: domain Description: ESPR Location: 17227-17296 bp Feature: domain Description: ESPR Location: 1 7227-1 7296 bp Feature: domain Description: Peptidase_S6 Location: 17377-19549 bp Feature: domain Description: Peptidase_S6 Location: 1 7377-1 9549 bp Feature: domain Description: autotrans_barl Location: 20113-21340 bp Feature: domain Description: autotrans_barl Location: 201 1 3-21 340 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDTG01000108.1 Shigella flexneri strain 4028STDY6274977 genome assembly, contig: ERS1017617SCcontig000108, whole genome shotgun sequence (11428 bp)
Overview 1 RT 1: 3-1068 bp Neighborhood of RT #1 [3, 1076] RVT-GII PRK10173 PRK10173 Feature: gene Location: 3-293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63-135 bp Feature: gene Location: 332-643 bp Feature: domain Description: PRK10173 Location: 335-554 bp Feature: domain Description: PRK10173 Location: 335-554 bp Feature: gene Location: 627-1076 bp Feature: domain Description: PRK10173 Location: 630-1068 bp Feature: domain Description: PRK10173 Location: 630-1068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: UDTG01000162.1 Shigella flexneri strain 4028STDY6274977 genome assembly, contig: ERS1017617SCcontig000162, whole genome shotgun sequence (5915 bp)
Overview 1 RT 1: 1-2637 bp Neighborhood of RT #1 [1, 2651] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 1-183 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: domain Description: DDE_Tnp_IS66 Location: 4-157 bp Feature: gene Location: 660-1877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 846-1500 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: domain Description: GIIM Note: maturase Location: 1578-1800 bp Feature: gene Location: 1993-2139 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2005-2116 bp Feature: gene Location: 2166-2651 bp Feature: domain Description: COG3547 Location: 2184-2637 bp Feature: domain Description: COG3 547 Location: 2184-263 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDTG01000156.1 Shigella flexneri strain 4028STDY6274977 genome assembly, contig: ERS1017617SCcontig000156, whole genome shotgun sequence (6295 bp)
Overview 1 RT 1: 979-4114 bp Neighborhood of RT #1 [979, 4114] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 979-1728 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1054-1708 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1054 -1708 bp Feature: gene Location: 2124-2324 bp Feature: domain Description: Tra5 Location: 2133-2307 bp Feature: domain Description: Tra5 Location: 2133-2307 bp Feature: gene Location: 2337-3140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2637-3132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2637-3132 bp Feature: gene Location: 3193-3519 bp Feature: domain Description: GIIM Note: maturase Location: 3226-3445 bp Feature: domain Description: GIIM Note: maturase Location: 3226-34 4 5 bp Feature: gene Location: 3872-4114 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)