myRT

myRT report for GCA_900485845.1_18787_5_79

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Seq: UIPE01000147.1 Shigella flexneri strain 4028STDY6275090 genome assembly, contig: ERS1017717SCcontig000147, whole genome shotgun sequence (8001 bp)
Overview 1 RT 1: 976-7998 bp Neighborhood of RT #1 [976, 7998] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 976-5094 bp Feature: domain Description: ESPR Location: 979-1048 bp Feature: domain Description: ESPR Location: 979-1 048 bp Feature: domain Description: Peptidase_S6 Location: 1129-3301 bp Feature: domain Description: Peptidase_S6 Location: 1 1 29-3301 bp Feature: domain Description: autotrans_barl Location: 3865-5092 bp Feature: domain Description: autotrans_barl Location: 3865-5092 bp Feature: gene Location: 5259-5645 bp Feature: domain Description: PHA02517 Location: 5262-5643 bp Feature: domain Description: PHA0251 7 Location: 5262-5643 bp Feature: gene Location: 5822-7345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6095-6827 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6095-6827 bp Feature: domain Description: GIIM Note: maturase Location: 6902-7100 bp Feature: domain Description: GIIM Note: maturase Location: 6902-71 00 bp Feature: gene Location: 7639-7998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIPE01000125.1 Shigella flexneri strain 4028STDY6275090 genome assembly, contig: ERS1017717SCcontig000125, whole genome shotgun sequence (9985 bp)
Overview 1 RT 1: 140-2725 bp Neighborhood of RT #1 [140, 2739] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 140-271 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152-245 bp Feature: domain Description: DDE_Tnp_IS66 Location: 152 -2 45 bp Feature: gene Location: 832-1965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 934-1588 bp Feature: domain Description: GIIM Note: maturase Location: 1666-1888 bp Feature: domain Description: GIIM Note: maturase Location: 1666-1888 bp Feature: gene Location: 2081-2227 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2093-2204 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 093-2 2 04 bp Feature: gene Location: 2254-2739 bp Feature: domain Description: COG3547 Location: 2272-2725 bp Feature: domain Description: COG3547 Location: 2 2 72 -2 72 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIPE01000159.1 Shigella flexneri strain 4028STDY6275090 genome assembly, contig: ERS1017717SCcontig000159, whole genome shotgun sequence (6338 bp)
Overview 1 RT 1: 1034-4169 bp Neighborhood of RT #1 [1034, 4169] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 1034-1783 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1109-1763 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1109-1763 bp Feature: gene Location: 2179-2379 bp Feature: domain Description: Tra5 Location: 2188-2362 bp Feature: domain Description: Tra5 Location: 2188-23 62 bp Feature: gene Location: 2392-3195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2692-3187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2692-3 187 bp Feature: gene Location: 3248-3574 bp Feature: domain Description: GIIM Note: maturase Location: 3281-3500 bp Feature: domain Description: GIIM Note: maturase Location: 3 281-3 500 bp Feature: gene Location: 3927-4169 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)