myRT

myRT report for GCA_900485855.1_18787_5_50

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Seq: UDTK01000116.1 Shigella flexneri strain 4028STDY6275059 genome assembly, contig: ERS1017686SCcontig000116, whole genome shotgun sequence (10988 bp)
Overview 1 RT 1: 7737-10985 bp Neighborhood of RT #1 [7737, 10985] PHA02517 PHA02517 RVT-GII GIIM Feature: gene Location: 7737-8384 bp Feature: domain Description: PHA02517 Location: 7740-8382 bp Feature: domain Description: PHA0251 7 Location: 7740-8382 bp Feature: gene Location: 8267-8623 bp Feature: domain Description: PHA02517 Location: 8330-8477 bp Feature: domain Description: PHA0251 7 Location: 8330-8477 bp Feature: gene Location: 8809-10332 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9082-9814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9082-981 4 bp Feature: domain Description: GIIM Note: maturase Location: 9889-10087 bp Feature: domain Description: GIIM Note: maturase Location: 9889-1 0087 bp Feature: gene Location: 10626-10985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDTK01000176.1 Shigella flexneri strain 4028STDY6275059 genome assembly, contig: ERS1017686SCcontig000176, whole genome shotgun sequence (5618 bp)
Overview 1 RT 1: 332-3467 bp Neighborhood of RT #1 [332, 3467] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 332-1081 bp Feature: domain Description: PAP2_acid_phosphatase Location: 407-1061 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 407-1061 bp Feature: gene Location: 1477-1677 bp Feature: domain Description: Tra5 Location: 1486-1660 bp Feature: domain Description: Tra5 Location: 1486-1660 bp Feature: gene Location: 1690-2493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990-2485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1990-2 485 bp Feature: gene Location: 2546-2872 bp Feature: domain Description: GIIM Note: maturase Location: 2579-2798 bp Feature: domain Description: GIIM Note: maturase Location: 2 579-2 798 bp Feature: gene Location: 3225-3467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDTK01000085.1 Shigella flexneri strain 4028STDY6275059 genome assembly, contig: ERS1017686SCcontig000085, whole genome shotgun sequence (18211 bp)
Overview 1 RT 1: 15561-18182 bp Neighborhood of RT #1 [15561, 18208] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 15561-16046 bp Feature: domain Description: COG3547 Location: 15579-16032 bp Feature: domain Description: COG3 547 Location: 15579-1603 2 bp Feature: gene Location: 16142-16309 bp Feature: gene Location: 16335-17552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16521-17175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16521-17175 bp Feature: domain Description: GIIM Note: maturase Location: 17253-17475 bp Feature: domain Description: GIIM Note: maturase Location: 17253 -17475 bp Feature: gene Location: 17563-17946 bp Feature: gene Location: 18029-18208 bp Feature: domain Description: DDE_Tnp_IS66 Location: 18032-18182 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1803 2-18182 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)