myRT

myRT report for GCA_900485865.1_18787_4_51

Download annotations/find similar RTs

Seq: UDTO01000017.1 Shigella flexneri strain 4028STDY6274964 genome assembly, contig: ERS1017593SCcontig000017, whole genome shotgun sequence (56364 bp)
Overview 1 RT 1: 3239-10655 bp Neighborhood of RT #1 [3239, 10657] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 3239-3367 bp Feature: gene Location: 3457-3696 bp Feature: domain Description: PHA02517 Location: 3460-3631 bp Feature: domain Description: PHA0251 7 Location: 3460-3631 bp Feature: gene Location: 4288-5811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561-5293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4561 -5293 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: domain Description: GIIM Note: maturase Location: 5368-5566 bp Feature: gene Location: 5988-6374 bp Feature: domain Description: PHA02517 Location: 5991-6372 bp Feature: domain Description: PHA0251 7 Location: 5991 -6372 bp Feature: gene Location: 6539-10657 bp Feature: domain Description: ESPR Location: 6542-6611 bp Feature: domain Description: ESPR Location: 6542-661 1 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: Peptidase_S6 Location: 6692-8864 bp Feature: domain Description: autotrans_barl Location: 9428-10655 bp Feature: domain Description: autotrans_barl Location: 9428-1 0655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDTO01000132.1 Shigella flexneri strain 4028STDY6274964 genome assembly, contig: ERS1017593SCcontig000132, whole genome shotgun sequence (9413 bp)
Overview 1 RT 1: 4227-6880 bp Neighborhood of RT #1 [4227, 6880] COG3547 RVT-GII GIIM Feature: gene Location: 4227-4712 bp Feature: domain Description: COG3547 Location: 4245-4698 bp Feature: domain Description: COG3547 Location: 42 45-4698 bp Feature: gene Location: 4808-4975 bp Feature: gene Location: 5001-6134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5103-5757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5103-5757 bp Feature: domain Description: GIIM Note: maturase Location: 5835-6057 bp Feature: domain Description: GIIM Note: maturase Location: 5835-6057 bp Feature: gene Location: 6229-6612 bp Feature: gene Location: 6686-6880 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDTO01000174.1 Shigella flexneri strain 4028STDY6274964 genome assembly, contig: ERS1017593SCcontig000174, whole genome shotgun sequence (5643 bp)
Overview 1 RT 1: 324-3459 bp Neighborhood of RT #1 [324, 3459] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 324-1073 bp Feature: domain Description: PAP2_acid_phosphatase Location: 399-1053 bp Feature: domain Description: PAP2_acid_phosphatase Location: 3 99-1053 bp Feature: gene Location: 1469-1669 bp Feature: domain Description: Tra5 Location: 1478-1652 bp Feature: domain Description: Tra5 Location: 1478-1652 bp Feature: gene Location: 1682-2485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982-2477 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1982-2477 bp Feature: gene Location: 2538-2864 bp Feature: domain Description: GIIM Note: maturase Location: 2571-2790 bp Feature: domain Description: GIIM Note: maturase Location: 2571-2790 bp Feature: gene Location: 3217-3459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)