myRT

myRT report for GCA_900485875.1_18787_5_86

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Seq: UDTP01000093.1 Shigella flexneri strain 4028STDY6275098 genome assembly, contig: ERS1017725SCcontig000093, whole genome shotgun sequence (14489 bp)
Overview 1 RT 1: 7835-11103 bp Neighborhood of RT #1 [7835, 11168] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 7835-8077 bp Feature: gene Location: 8209-8655 bp Feature: domain Description: PHA02517 Location: 8212-8653 bp Feature: domain Description: PHA0251 7 Location: 821 2-8653 bp Feature: gene Location: 8772-10295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9045-9777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9045-9777 bp Feature: domain Description: GIIM Note: maturase Location: 9852-10050 bp Feature: domain Description: GIIM Note: maturase Location: 9852-1 0050 bp Feature: gene Location: 10249-10674 bp Feature: gene Location: 10887-11168 bp Feature: domain Description: PHA02517 Location: 10893-11103 bp Feature: domain Description: PHA0251 7 Location: 1 0893-1 1 1 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: UDTP01000004.1 Shigella flexneri strain 4028STDY6275098 genome assembly, contig: ERS1017725SCcontig000004, whole genome shotgun sequence (90903 bp)
Overview 1 RT 1: 86463-90040 bp Neighborhood of RT #1 [86463, 90045] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 86463-86645 bp Feature: gene Location: 86874-87083 bp Feature: gene Location: 87218-89119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87485-88316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87485-88316 bp Feature: domain Description: Intron_maturas2 Location: 88430-88688 bp Feature: domain Description: Intron_maturas2 Location: 88430-88688 bp Feature: domain Description: HNHc Note: nucleases Location: 88862-89024 bp Feature: domain Description: HNHc Note: nucleases Location: 88862 -8902 4 bp Feature: gene Location: 89314-89754 bp Feature: domain Description: PRK13732 Location: 89320-89752 bp Feature: domain Description: PRK13732 Location: 8932 0-89752 bp Feature: gene Location: 89812-90045 bp Feature: domain Description: DUF905 Location: 89842-90040 bp Feature: domain Description: DUF905 Location: 89842 -90040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: UDTP01000176.1 Shigella flexneri strain 4028STDY6275098 genome assembly, contig: ERS1017725SCcontig000176, whole genome shotgun sequence (5644 bp)
Overview 1 RT 1: 328-3463 bp Neighborhood of RT #1 [328, 3463] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 328-1077 bp Feature: domain Description: PAP2_acid_phosphatase Location: 403-1057 bp Feature: domain Description: PAP2_acid_phosphatase Location: 403 -1057 bp Feature: gene Location: 1473-1673 bp Feature: domain Description: Tra5 Location: 1482-1656 bp Feature: domain Description: Tra5 Location: 1482-1656 bp Feature: gene Location: 1686-2489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1986-2481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1986-2481 bp Feature: gene Location: 2542-2868 bp Feature: domain Description: GIIM Note: maturase Location: 2575-2794 bp Feature: domain Description: GIIM Note: maturase Location: 2575-2794 bp Feature: gene Location: 3221-3463 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDTP01000168.1 Shigella flexneri strain 4028STDY6275098 genome assembly, contig: ERS1017725SCcontig000168, whole genome shotgun sequence (5963 bp)
Overview 1 RT 1: 3208-5861 bp Neighborhood of RT #1 [3208, 5861] COG3547 RVT-GII GIIM Feature: gene Location: 3208-3693 bp Feature: domain Description: COG3547 Location: 3226-3679 bp Feature: domain Description: COG354 7 Location: 3226-3679 bp Feature: gene Location: 3789-3956 bp Feature: gene Location: 3982-5199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4168-4822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 168-4 822 bp Feature: domain Description: GIIM Note: maturase Location: 4900-5122 bp Feature: domain Description: GIIM Note: maturase Location: 4 900-5122 bp Feature: gene Location: 5210-5593 bp Feature: gene Location: 5667-5861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)