myRT

myRT report for GCA_900485885.1_18787_5_9

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Seq: UDTQ01000021.1 Shigella flexneri strain 4028STDY6275018 genome assembly, contig: ERS1017612SCcontig000021, whole genome shotgun sequence (54747 bp)
Overview 1 RT 1: 1623-9039 bp Neighborhood of RT #1 [1623, 9041] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1623-1751 bp Feature: gene Location: 1841-2080 bp Feature: domain Description: PHA02517 Location: 1844-2015 bp Feature: domain Description: PHA0251 7 Location: 1 844-201 5 bp Feature: gene Location: 2672-4195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2945-3677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2945-3677 bp Feature: domain Description: GIIM Note: maturase Location: 3752-3950 bp Feature: domain Description: GIIM Note: maturase Location: 3752-3950 bp Feature: gene Location: 4372-4758 bp Feature: domain Description: PHA02517 Location: 4375-4756 bp Feature: domain Description: PHA0251 7 Location: 4375-4756 bp Feature: gene Location: 4923-9041 bp Feature: domain Description: ESPR Location: 4926-4995 bp Feature: domain Description: ESPR Location: 4926-4995 bp Feature: domain Description: Peptidase_S6 Location: 5076-7248 bp Feature: domain Description: Peptidase_S6 Location: 5076-7248 bp Feature: domain Description: autotrans_barl Location: 7812-9039 bp Feature: domain Description: autotrans_barl Location: 781 2-9039 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDTQ01000154.1 Shigella flexneri strain 4028STDY6275018 genome assembly, contig: ERS1017612SCcontig000154, whole genome shotgun sequence (7049 bp)
Overview 1 RT 1: 4399-7020 bp Neighborhood of RT #1 [4399, 7046] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 4399-4884 bp Feature: domain Description: COG3547 Location: 4417-4870 bp Feature: domain Description: COG3547 Location: 4417-4870 bp Feature: gene Location: 4980-5147 bp Feature: gene Location: 5173-6390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5359-6013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5359-6013 bp Feature: domain Description: GIIM Note: maturase Location: 6091-6313 bp Feature: domain Description: GIIM Note: maturase Location: 6091-6313 bp Feature: gene Location: 6401-6784 bp Feature: gene Location: 6867-7046 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6870-7020 bp Feature: domain Description: DDE_Tnp_IS66 Location: 6870-702 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDTQ01000161.1 Shigella flexneri strain 4028STDY6275018 genome assembly, contig: ERS1017612SCcontig000161, whole genome shotgun sequence (6259 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3 120 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 3 214-3 43 3 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)