myRT

myRT report for GCA_900485895.1_18787_5_49

Download annotations/find similar RTs

Seq: UDTU01000243.1 Shigella flexneri strain 4028STDY6275058 genome assembly, contig: ERS1017685SCcontig000243, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: UDTU01000170.1 Shigella flexneri strain 4028STDY6275058 genome assembly, contig: ERS1017685SCcontig000170, whole genome shotgun sequence (5839 bp)
Overview 1 RT 1: 2596-5297 bp Neighborhood of RT #1 [2596, 5317] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2596-2751 bp Feature: gene Location: 2777-3148 bp Feature: domain Description: GIIM Note: maturase Location: 2855-3074 bp Feature: domain Description: GIIM Note: maturase Location: 2 855-3074 bp Feature: gene Location: 3156-3959 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3456-3951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3456-3951 bp Feature: gene Location: 3972-4172 bp Feature: domain Description: Tra5 Location: 3981-4155 bp Feature: domain Description: Tra5 Location: 3981-4155 bp Feature: gene Location: 4568-5317 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4643-5297 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 4643-52 97 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDTU01000085.1 Shigella flexneri strain 4028STDY6275058 genome assembly, contig: ERS1017685SCcontig000085, whole genome shotgun sequence (17017 bp)
Overview 1 RT 1: 14262-16915 bp Neighborhood of RT #1 [14262, 16915] COG3547 RVT-GII GIIM Feature: gene Location: 14262-14747 bp Feature: domain Description: COG3547 Location: 14280-14733 bp Feature: domain Description: COG3 547 Location: 14280-1473 3 bp Feature: gene Location: 14843-15010 bp Feature: gene Location: 15036-16253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: gene Location: 16264-16647 bp Feature: gene Location: 16721-16915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)