myRT

myRT report for GCA_900485905.1_18787_4_14

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Seq: UDTM01000159.1 Shigella flexneri strain 4028STDY6274927 genome assembly, contig: ERS1017556SCcontig000159, whole genome shotgun sequence (6283 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1 042-1 696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 21 21 -2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-31 20 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 321 4-3433 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)

Seq: UDTM01000133.1 Shigella flexneri strain 4028STDY6274927 genome assembly, contig: ERS1017556SCcontig000133, whole genome shotgun sequence (8830 bp)
Overview 1 RT 1: 1204-8620 bp Neighborhood of RT #1 [1204, 8622] PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1204-1332 bp Feature: gene Location: 1380-1661 bp Feature: domain Description: PHA02517 Location: 1386-1596 bp Feature: domain Description: PHA02 517 Location: 1386-1596 bp Feature: gene Location: 2253-3776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2526-3258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 52 6-32 58 bp Feature: domain Description: GIIM Note: maturase Location: 3333-3531 bp Feature: domain Description: GIIM Note: maturase Location: 3333-3531 bp Feature: gene Location: 3953-4339 bp Feature: domain Description: PHA02517 Location: 3956-4337 bp Feature: domain Description: PHA02 517 Location: 3956-4337 bp Feature: gene Location: 4504-8622 bp Feature: domain Description: ESPR Location: 4507-4576 bp Feature: domain Description: ESPR Location: 4507-4576 bp Feature: domain Description: Peptidase_S6 Location: 4657-6829 bp Feature: domain Description: Peptidase_S6 Location: 4657-682 9 bp Feature: domain Description: autotrans_barl Location: 7393-8620 bp Feature: domain Description: autotrans_barl Location: 7393-862 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDTM01000116.1 Shigella flexneri strain 4028STDY6274927 genome assembly, contig: ERS1017556SCcontig000116, whole genome shotgun sequence (10675 bp)
Overview 1 RT 1: 7920-10573 bp Neighborhood of RT #1 [7920, 10573] COG3547 RVT-GII GIIM Feature: gene Location: 7920-8405 bp Feature: domain Description: COG3547 Location: 7938-8391 bp Feature: domain Description: COG3 547 Location: 793 8-83 91 bp Feature: gene Location: 8501-8668 bp Feature: gene Location: 8694-9911 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8880-9534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8880-953 4 bp Feature: domain Description: GIIM Note: maturase Location: 9612-9834 bp Feature: domain Description: GIIM Note: maturase Location: 9612-983 4 bp Feature: gene Location: 9922-10305 bp Feature: gene Location: 10379-10573 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)