myRT

myRT report for GCA_900485915.1_18787_5_91

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Seq: UDUC01000082.1 Shigella flexneri strain 4028STDY6275103 genome assembly, contig: ERS1017730SCcontig000082, whole genome shotgun sequence (17497 bp)
Overview 1 RT 1: 13848-17485 bp Neighborhood of RT #1 [13848, 17496] COG2085 PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 13848-14261 bp Feature: domain Description: COG2085 Location: 13947-14094 bp Feature: domain Description: COG2085 Location: 1 3947-1 4094 bp Feature: gene Location: 14427-14603 bp Feature: domain Description: PHA02517 Location: 14430-14532 bp Feature: domain Description: PHA0251 7 Location: 1 4430-1 4532 bp Feature: gene Location: 14756-16279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15029-15761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5029-1 5761 bp Feature: domain Description: GIIM Note: maturase Location: 15836-16034 bp Feature: domain Description: GIIM Note: maturase Location: 1 5836-1 6034 bp Feature: gene Location: 16871-17296 bp Feature: domain Description: PHA02517 Location: 16895-17231 bp Feature: domain Description: PHA0251 7 Location: 1 6895-1 7231 bp Feature: gene Location: 17323-17496 bp Feature: domain Description: InsE Location: 17326-17485 bp Feature: domain Description: InsE Location: 1 7326-1 7485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsE (COG2963)

Seq: UDUC01000138.1 Shigella flexneri strain 4028STDY6275103 genome assembly, contig: ERS1017730SCcontig000138, whole genome shotgun sequence (8951 bp)
Overview 1 RT 1: 3218-5871 bp Neighborhood of RT #1 [3218, 5871] COG3547 RVT-GII GIIM Feature: gene Location: 3218-3703 bp Feature: domain Description: COG3547 Location: 3236-3689 bp Feature: domain Description: COG3547 Location: 32 36-3689 bp Feature: gene Location: 3799-3966 bp Feature: gene Location: 3992-5209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4178-4832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4178-4832 bp Feature: domain Description: GIIM Note: maturase Location: 4910-5132 bp Feature: domain Description: GIIM Note: maturase Location: 4910-5132 bp Feature: gene Location: 5220-5603 bp Feature: gene Location: 5677-5871 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDUC01000172.1 Shigella flexneri strain 4028STDY6275103 genome assembly, contig: ERS1017730SCcontig000172, whole genome shotgun sequence (5836 bp)
Overview 1 RT 1: 520-3655 bp Neighborhood of RT #1 [520, 3655] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 520-1269 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1249 bp Feature: domain Description: PAP2_acid_phosphatase Location: 595-1249 bp Feature: gene Location: 1665-1865 bp Feature: domain Description: Tra5 Location: 1674-1848 bp Feature: domain Description: Tra5 Location: 1674-1848 bp Feature: gene Location: 1878-2681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178-2673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2178-2673 bp Feature: gene Location: 2734-3060 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: domain Description: GIIM Note: maturase Location: 2767-2986 bp Feature: gene Location: 3413-3655 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)