myRT

myRT report for GCA_900485925.1_18787_5_85

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Seq: UDTR01000166.1 Shigella flexneri strain 4028STDY6275097 genome assembly, contig: ERS1017724SCcontig000166, whole genome shotgun sequence (5869 bp)
Overview 1 RT 1: 3219-5840 bp Neighborhood of RT #1 [3219, 5866] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 3219-3704 bp Feature: domain Description: COG3547 Location: 3237-3690 bp Feature: domain Description: COG3547 Location: 3237-3690 bp Feature: gene Location: 3800-3967 bp Feature: gene Location: 3993-5210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4179-4833 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 79-4833 bp Feature: domain Description: GIIM Note: maturase Location: 4911-5133 bp Feature: domain Description: GIIM Note: maturase Location: 491 1 -51 33 bp Feature: gene Location: 5221-5604 bp Feature: gene Location: 5687-5866 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5690-5840 bp Feature: domain Description: DDE_Tnp_IS66 Location: 5690-5840 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDTR01000141.1 Shigella flexneri strain 4028STDY6275097 genome assembly, contig: ERS1017724SCcontig000141, whole genome shotgun sequence (8220 bp)
Overview 1 RT 1: 2841-5976 bp Neighborhood of RT #1 [2841, 5976] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 2841-3590 bp Feature: domain Description: PAP2_acid_phosphatase Location: 2916-3570 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 916-3570 bp Feature: gene Location: 3986-4186 bp Feature: domain Description: Tra5 Location: 3995-4169 bp Feature: domain Description: Tra5 Location: 3995-4169 bp Feature: gene Location: 4199-5002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4499-4994 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4499-4994 bp Feature: gene Location: 5055-5381 bp Feature: domain Description: GIIM Note: maturase Location: 5088-5307 bp Feature: domain Description: GIIM Note: maturase Location: 5088-5307 bp Feature: gene Location: 5734-5976 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: UDTR01000145.1 Shigella flexneri strain 4028STDY6275097 genome assembly, contig: ERS1017724SCcontig000145, whole genome shotgun sequence (7998 bp)
Overview 1 RT 1: 1-7024 bp Neighborhood of RT #1 [1, 7026] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2357-2743 bp Feature: domain Description: PHA02517 Location: 2360-2741 bp Feature: domain Description: PHA02517 Location: 23 60-2741 bp Feature: gene Location: 2908-7026 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: ESPR Location: 2911-2980 bp Feature: domain Description: Peptidase_S6 Location: 3061-5233 bp Feature: domain Description: Peptidase_S6 Location: 3 061-523 3 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Feature: domain Description: autotrans_barl Location: 5797-7024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)