myRT

myRT report for GCA_900485935.1_18787_5_68

Download annotations/find similar RTs

Seq: UDTT01000086.1 Shigella flexneri strain 4028STDY6275077 genome assembly, contig: ERS1017704SCcontig000086, whole genome shotgun sequence (17017 bp)
Overview 1 RT 1: 14262-16915 bp Neighborhood of RT #1 [14262, 16915] COG3547 RVT-GII GIIM Feature: gene Location: 14262-14747 bp Feature: domain Description: COG3547 Location: 14280-14733 bp Feature: domain Description: COG3547 Location: 1 4280-1 4733 bp Feature: gene Location: 14843-15010 bp Feature: gene Location: 15036-16253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5222-1 5876 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: domain Description: GIIM Note: maturase Location: 1 5954-1 61 76 bp Feature: gene Location: 16264-16647 bp Feature: gene Location: 16721-16915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDTT01000169.1 Shigella flexneri strain 4028STDY6275077 genome assembly, contig: ERS1017704SCcontig000169, whole genome shotgun sequence (5835 bp)
Overview 1 RT 1: 2588-5289 bp Neighborhood of RT #1 [2588, 5309] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 2588-2743 bp Feature: gene Location: 2769-3140 bp Feature: domain Description: GIIM Note: maturase Location: 2847-3066 bp Feature: domain Description: GIIM Note: maturase Location: 2 847-3066 bp Feature: gene Location: 3148-3951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3448-3943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3448-3943 bp Feature: gene Location: 3964-4164 bp Feature: domain Description: Tra5 Location: 3973-4147 bp Feature: domain Description: Tra5 Location: 3973-4147 bp Feature: gene Location: 4560-5309 bp Feature: domain Description: PAP2_acid_phosphatase Location: 4635-5289 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 4635-52 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Tra5 (COG2801), PAP2_acid_phosphatase (cd03397)

Seq: UDTT01000114.1 Shigella flexneri strain 4028STDY6275077 genome assembly, contig: ERS1017704SCcontig000114, whole genome shotgun sequence (10949 bp)
Overview 1 RT 1: 1-3170 bp Neighborhood of RT #1 [1, 3170] RVT-GII GIIM PHA02517 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Feature: gene Location: 2315-2743 bp Feature: domain Description: PHA02517 Location: 2318-2741 bp Feature: domain Description: PHA02517 Location: 23 18-2741 bp Feature: gene Location: 3015-3170 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)