myRT

myRT report for GCA_900485945.1_18787_5_80

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Seq: UIPF01000210.1 Shigella flexneri strain 4028STDY6275091 genome assembly, contig: ERS1017718SCcontig000210, whole genome shotgun sequence (3584 bp)
Overview 1 RT 1: 1-3213 bp Neighborhood of RT #1 [1, 3248] RVT-GII GIIM PHA02517 DDE_Tnp_ISL3 Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Feature: gene Location: 2338-3018 bp Feature: domain Description: PHA02517 Location: 2377-3016 bp Feature: domain Description: PHA0251 7 Location: 2377-301 6 bp Feature: gene Location: 3021-3248 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3072-3213 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3072-321 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388)

Seq: UIPF01000159.1 Shigella flexneri strain 4028STDY6275091 genome assembly, contig: ERS1017718SCcontig000159, whole genome shotgun sequence (6982 bp)
Overview 1 RT 1: 157-2742 bp Neighborhood of RT #1 [157, 2756] DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 157-288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-262 bp Feature: domain Description: DDE_Tnp_IS66 Location: 169-2 62 bp Feature: gene Location: 849-1982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1605 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: domain Description: GIIM Note: maturase Location: 1683-1905 bp Feature: gene Location: 2098-2244 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2110-2221 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 110-2 2 2 1 bp Feature: gene Location: 2271-2756 bp Feature: domain Description: COG3547 Location: 2289-2742 bp Feature: domain Description: COG3547 Location: 2 2 89-2 742 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIPF01000161.1 Shigella flexneri strain 4028STDY6275091 genome assembly, contig: ERS1017718SCcontig000161, whole genome shotgun sequence (6701 bp)
Overview 1 RT 1: 413-4520 bp Neighborhood of RT #1 [413, 4520] PAP2_acid_phosphatase Tra5 RVT-GII Tra5 RVT-GII GIIM Feature: gene Location: 413-1162 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: gene Location: 1558-1758 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: gene Location: 1771-2268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2203 bp Feature: gene Location: 2530-2730 bp Feature: domain Description: Tra5 Location: 2539-2713 bp Feature: domain Description: Tra5 Location: 253 9-2713 bp Feature: gene Location: 2743-3546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3043-3538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 043 -3 53 8 bp Feature: gene Location: 3599-3925 bp Feature: domain Description: GIIM Note: maturase Location: 3632-3851 bp Feature: domain Description: GIIM Note: maturase Location: 3 63 2-3 851 bp Feature: gene Location: 4278-4520 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)