myRT

myRT report for GCA_900485955.1_18787_5_26

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Seq: UIPC01000142.1 Shigella flexneri strain 4028STDY6275035 genome assembly, contig: ERS1017646SCcontig000142, whole genome shotgun sequence (8559 bp)
Overview 1 RT 1: 971-8244 bp Neighborhood of RT #1 [971, 8244] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 971-5089 bp Feature: domain Description: ESPR Location: 974-1043 bp Feature: domain Description: ESPR Location: 974-1 043 bp Feature: domain Description: Peptidase_S6 Location: 1124-3296 bp Feature: domain Description: Peptidase_S6 Location: 1 1 24-3296 bp Feature: domain Description: autotrans_barl Location: 3860-5087 bp Feature: domain Description: autotrans_barl Location: 3860-5087 bp Feature: gene Location: 5254-5640 bp Feature: domain Description: PHA02517 Location: 5257-5638 bp Feature: domain Description: PHA0251 7 Location: 5257-5638 bp Feature: gene Location: 5817-7340 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6090-6822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6090-6822 bp Feature: domain Description: GIIM Note: maturase Location: 6897-7095 bp Feature: domain Description: GIIM Note: maturase Location: 6897-7095 bp Feature: gene Location: 7634-8002 bp Feature: gene Location: 8077-8244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UIPC01000081.1 Shigella flexneri strain 4028STDY6275035 genome assembly, contig: ERS1017646SCcontig000081, whole genome shotgun sequence (17010 bp)
Overview 1 RT 1: 14262-16915 bp Neighborhood of RT #1 [14262, 16915] COG3547 RVT-GII GIIM Feature: gene Location: 14262-14747 bp Feature: domain Description: COG3547 Location: 14280-14733 bp Feature: domain Description: COG3547 Location: 142 80-14733 bp Feature: gene Location: 14843-15010 bp Feature: gene Location: 15036-16253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15222-15876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 152 2 2 -15876 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: domain Description: GIIM Note: maturase Location: 15954-16176 bp Feature: gene Location: 16264-16647 bp Feature: gene Location: 16721-16915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UIPC01000163.1 Shigella flexneri strain 4028STDY6275035 genome assembly, contig: ERS1017646SCcontig000163, whole genome shotgun sequence (6248 bp)
Overview 1 RT 1: 967-4102 bp Neighborhood of RT #1 [967, 4102] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 967-1716 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: domain Description: PAP2_acid_phosphatase Location: 1042-1696 bp Feature: gene Location: 2112-2312 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: domain Description: Tra5 Location: 2121-2295 bp Feature: gene Location: 2325-3128 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2625-3 120 bp Feature: gene Location: 3181-3507 bp Feature: domain Description: GIIM Note: maturase Location: 3214-3433 bp Feature: domain Description: GIIM Note: maturase Location: 3 214-3 43 3 bp Feature: gene Location: 3860-4102 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)