myRT

myRT report for GCA_900485965.1_18787_5_25

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Seq: UDUK01000085.1 Shigella flexneri strain 4028STDY6275034 genome assembly, contig: ERS1017644SCcontig000085, whole genome shotgun sequence (17008 bp)
Overview 1 RT 1: 14253-16906 bp Neighborhood of RT #1 [14253, 16906] COG3547 RVT-GII GIIM Feature: gene Location: 14253-14738 bp Feature: domain Description: COG3547 Location: 14271-14724 bp Feature: domain Description: COG3547 Location: 1 4271 -1 4724 bp Feature: gene Location: 14834-15001 bp Feature: gene Location: 15027-16244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15213-15867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 521 3-1 5867 bp Feature: domain Description: GIIM Note: maturase Location: 15945-16167 bp Feature: domain Description: GIIM Note: maturase Location: 1 5945-1 61 67 bp Feature: gene Location: 16255-16638 bp Feature: gene Location: 16712-16906 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: UDUK01000143.1 Shigella flexneri strain 4028STDY6275034 genome assembly, contig: ERS1017644SCcontig000143, whole genome shotgun sequence (8550 bp)
Overview 1 RT 1: 2-7587 bp Neighborhood of RT #1 [2, 7589] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 2-175 bp Feature: domain Description: InsE Location: 5-164 bp Feature: domain Description: InsE Location: 5-164 bp Feature: gene Location: 202-603 bp Feature: domain Description: PHA02517 Location: 226-568 bp Feature: domain Description: PHA02 517 Location: 2 2 6-568 bp Feature: gene Location: 1220-2743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493-2225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1493-2 2 2 5 bp Feature: domain Description: GIIM Note: maturase Location: 2300-2498 bp Feature: domain Description: GIIM Note: maturase Location: 2 300-2 498 bp Feature: gene Location: 2920-3306 bp Feature: domain Description: PHA02517 Location: 2923-3304 bp Feature: domain Description: PHA02 517 Location: 2 92 3-3304 bp Feature: gene Location: 3471-7589 bp Feature: domain Description: ESPR Location: 3474-3543 bp Feature: domain Description: ESPR Location: 3474-3543 bp Feature: domain Description: Peptidase_S6 Location: 3624-5796 bp Feature: domain Description: Peptidase_S6 Location: 362 4-5796 bp Feature: domain Description: autotrans_barl Location: 6360-7587 bp Feature: domain Description: autotrans_barl Location: 6360-7587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDUK01000169.1 Shigella flexneri strain 4028STDY6275034 genome assembly, contig: ERS1017644SCcontig000169, whole genome shotgun sequence (5834 bp)
Overview 1 RT 1: 518-3653 bp Neighborhood of RT #1 [518, 3653] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 518-1267 bp Feature: domain Description: PAP2_acid_phosphatase Location: 593-1247 bp Feature: domain Description: PAP2_acid_phosphatase Location: 593 -1247 bp Feature: gene Location: 1663-1863 bp Feature: domain Description: Tra5 Location: 1672-1846 bp Feature: domain Description: Tra5 Location: 1672-1846 bp Feature: gene Location: 1876-2679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176-2671 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2176-2671 bp Feature: gene Location: 2732-3058 bp Feature: domain Description: GIIM Note: maturase Location: 2765-2984 bp Feature: domain Description: GIIM Note: maturase Location: 2765-2984 bp Feature: gene Location: 3411-3653 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)