myRT

myRT report for GCA_900485975.1_18787_5_28

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Seq: UDTW01000090.1 Shigella flexneri strain 4028STDY6275037 genome assembly, contig: ERS1017650SCcontig000090, whole genome shotgun sequence (14756 bp)
Overview 1 RT 1: 6071-13785 bp Neighborhood of RT #1 [6071, 13787] InsE PHA02517 RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 6071-6373 bp Feature: domain Description: InsE Location: 6080-6362 bp Feature: domain Description: InsE Location: 6080-6362 bp Feature: gene Location: 6400-6801 bp Feature: domain Description: PHA02517 Location: 6424-6766 bp Feature: domain Description: PHA0251 7 Location: 6424-6766 bp Feature: gene Location: 7418-8941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7691-8423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7691 -8423 bp Feature: domain Description: GIIM Note: maturase Location: 8498-8696 bp Feature: domain Description: GIIM Note: maturase Location: 8498-8696 bp Feature: gene Location: 9118-9504 bp Feature: domain Description: PHA02517 Location: 9121-9502 bp Feature: domain Description: PHA0251 7 Location: 91 21 -9502 bp Feature: gene Location: 9669-13787 bp Feature: domain Description: ESPR Location: 9672-9741 bp Feature: domain Description: ESPR Location: 9672-9741 bp Feature: domain Description: Peptidase_S6 Location: 9822-11994 bp Feature: domain Description: Peptidase_S6 Location: 9822-1 1 994 bp Feature: domain Description: autotrans_barl Location: 12558-13785 bp Feature: domain Description: autotrans_barl Location: 1 2558-1 3785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)

Seq: UDTW01000082.1 Shigella flexneri strain 4028STDY6275037 genome assembly, contig: ERS1017650SCcontig000082, whole genome shotgun sequence (17685 bp)
Overview 1 RT 1: 15035-17656 bp Neighborhood of RT #1 [15035, 17682] COG3547 RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 15035-15520 bp Feature: domain Description: COG3547 Location: 15053-15506 bp Feature: domain Description: COG3547 Location: 15053-15506 bp Feature: gene Location: 15616-15783 bp Feature: gene Location: 15809-17026 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15995-16649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15995-16649 bp Feature: domain Description: GIIM Note: maturase Location: 16727-16949 bp Feature: domain Description: GIIM Note: maturase Location: 1672 7-16949 bp Feature: gene Location: 17037-17420 bp Feature: gene Location: 17503-17682 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17506-17656 bp Feature: domain Description: DDE_Tnp_IS66 Location: 17506-17656 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050)

Seq: UDTW01000174.1 Shigella flexneri strain 4028STDY6275037 genome assembly, contig: ERS1017650SCcontig000174, whole genome shotgun sequence (5699 bp)
Overview 1 RT 1: 413-3548 bp Neighborhood of RT #1 [413, 3548] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 413-1162 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: domain Description: PAP2_acid_phosphatase Location: 488-1142 bp Feature: gene Location: 1558-1758 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: domain Description: Tra5 Location: 1567-1741 bp Feature: gene Location: 1771-2574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2071-2566 bp Feature: gene Location: 2627-2953 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: domain Description: GIIM Note: maturase Location: 2660-2879 bp Feature: gene Location: 3306-3548 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)